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Detecting meaningful structure in neural activity and connectivity data is challenging in the presence of hidden nonlinearities, where traditional eigenvalue-based methods may be misleading. We introduce a novel approach to matrix analysis,…

Neurons and Cognition · Quantitative Biology 2015-11-24 Chad Giusti , Eva Pastalkova , Carina Curto , Vladimir Itskov

We present a parallel k-clique listing algorithm with improved work bounds (for the same depth) in sparse graphs with low degeneracy or arboricity. We achieve this by introducing and analyzing a new pruning criterion for a backtracking…

Data Structures and Algorithms · Computer Science 2021-09-21 Lukas Gianinazzi , Maciej Besta , Yannick Schaffner , Torsten Hoefler

We introduce an architecture based on deep hierarchical decompositions to learn effective representations of large graphs. Our framework extends classic R-decompositions used in kernel methods, enabling nested part-of-part relations. Unlike…

Machine Learning · Computer Science 2024-03-19 Francesco Orsini , Daniele Baracchi , Paolo Frasconi

We consider the fundamental problem of detecting/counting copies of a fixed pattern graph in a host graph. The recent progress on this problem has not included complete pattern graphs, i.e., cliques (and their complements, i.e., edge-free…

Data Structures and Algorithms · Computer Science 2021-10-01 Mirosław Kowaluk , Andrzej Lingas

Nonnegative matrix factorization (NMF) is widely used for clustering with strong interpretability. Among general NMF problems, symmetric NMF is a special one that plays an important role in graph clustering where each element measures the…

Machine Learning · Computer Science 2023-11-07 Mengyuan Zhang , Kai Liu

In this article, we propose a new type of square matrix associated with an undirected graph by trading off the naturally imbedded symmetry in them. The proposed matrix is defined using the neighbourhood sets of the vertices. It is called as…

Discrete Mathematics · Computer Science 2019-03-14 Sivakumar Karunakaran , Lavanya Selvaganesh

Given an undirected graph $G = (V,E)$ with a set $V$ of vertices and a set $E$ of edges, the minimum sum coloring problem (MSCP) is to find a legal vertex coloring of $G$, using colors represented by natural numbers $1, 2, . . .$ such that…

Discrete Mathematics · Computer Science 2013-03-28 Qinghua Wu , Jin-Kao Hao

We introduce a dynamic version of the NP-hard graph problem Cluster Editing. The essential point here is to take into account dynamically evolving input graphs: Having a cluster graph (that is, a disjoint union of cliques) that represents a…

Discrete Mathematics · Computer Science 2018-12-12 Junjie Luo , Hendrik Molter , André Nichterlein , Rolf Niedermeier

A new technique for approximating the entire solution set for a nonlinear system of relations (nonlinear equations, inequalities, etc. involving algebraic, smooth, or even continuous functions) is presented. The technique is to first plot…

Numerical Analysis · Computer Science 2017-12-07 David I. Spivak

The theory of dense graph limits comes with a natural sampling process which yields an inhomogeneous variant G(n,W) of the Erdos-Renyi random graph. Here we study the clique number of these random graphs. We establish the concentration of…

Combinatorics · Mathematics 2018-12-04 Martin Doležal , Jan Hladký , András Máthé

Semi-supervised clustering is a basic problem in various applications. Most existing methods require knowledge of the ideal cluster number, which is often difficult to obtain in practice. Besides, satisfying the must-link constraints is…

Optimization and Control · Mathematics 2025-03-07 Wei Liu , Xin Liu , Michael K. Ng , Zaikun Zhang

We study the set of all decompositions (clusterings) of a graph through its characterization as a set of lifted multicuts. This leads us to practically relevant insights related to the definition of a class of decompositions by must-join…

Discrete Mathematics · Computer Science 2017-06-09 Andrea Horňáková , Jan-Hendrik Lange , Bjoern Andres

Clique clustering is the problem of partitioning the vertices of a graph into disjoint clusters, where each cluster forms a clique in the graph, while optimizing some objective function. In online clustering, the input graph is given one…

Data Structures and Algorithms · Computer Science 2016-10-18 Marek Chrobak , Christoph Durr , Aleksander Fabijan , Bengt Nilsson

Bifiltered graphs are a versatile tool for modelling relations between data points across multiple grades of a two-dimensional scale. They are especially popular in topological data analysis, where the homological properties of the induced…

Computational Geometry · Computer Science 2023-03-13 Ángel Javier Alonso , Michael Kerber , Siddharth Pritam

Isolation is a concept from the world of clique enumeration that is mostly used to model communities that do not have much contact to the outside world. Herein, a clique is considered isolated if it has few edges connecting it to the rest…

Data Structures and Algorithms · Computer Science 2021-03-05 Hendrik Molter , Rolf Niedermeier , Malte Renken

The aggregated journal-journal citation matrix derived from the Journal Citation Reports 2001 can be decomposed into a unique subject classification by using the graph-analytical algorithm of bi-connected components. This technique was…

Digital Libraries · Computer Science 2009-12-08 Loet Leydesdorff

Graph-based clustering methods like spectral clustering and SpectralNet are very efficient in detecting clusters of non-convex shapes. Unlike the popular $k$-means, graph-based clustering methods do not assume that each cluster has a single…

Machine Learning · Computer Science 2023-02-28 Mashaan Alshammari , John Stavrakakis , Masahiro Takatsuka

In this paper, we propose a simple algorithm to cluster nonnegative data lying in disjoint subspaces. We analyze its performance in relation to a certain measure of correlation between said subspaces. We use our clustering algorithm to…

Machine Learning · Statistics 2020-09-04 C. Strohmeier , D. Needell

In a sequence of four papers, we prove the following results (via a unified approach) for all sufficiently large $n$: (i) [1-factorization conjecture] Suppose that $n$ is even and $D\geq 2\lceil n/4\rceil -1$. Then every $D$-regular graph…

Combinatorics · Mathematics 2014-10-24 Daniela Kühn , Allan Lo , Deryk Osthus

Considering a clique as a conservative definition of community structure, we examine how graph partitioning algorithms interact with cliques. Many popular community-finding algorithms partition the entire graph into non-overlapping…

Physics and Society · Physics 2012-05-15 Fergal Reid , Aaron McDaid , Neil Hurley