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Accurately determining and classifying the structure of complex networks is the focus of much current research. One class of network of particular interest are metabolic pathways, which have previously been studied from a graph theoretical…

Mathematical Physics · Physics 2012-10-10 Henry Dorrian , Kieran Smallbone , Jon borresen

We provide a numerical study of the macroscopic model of [3] derived from an agent-based model for a system of particles interacting through a dynamical network of links. Assuming that the network remodelling process is very fast, the…

Over the last decade, random hyperbolic graphs have proved successful in providing geometric explanations for many key properties of real-world networks, including strong clustering, high navigability, and heterogeneous degree…

Physics and Society · Physics 2023-03-01 Béatrice Désy , Patrick Desrosiers , Antoine Allard

Real-time simulation of elastic structures is essential in many applications, from computer-guided surgical interventions to interactive design in mechanical engineering. The Finite Element Method is often used as the numerical method of…

Machine Learning · Computer Science 2021-09-21 Alban Odot , Ryadh Haferssas , Stéphane Cotin

By the simple finite element method, we study the symplectic, multisymplectic structures and relevant preserving properties in some semi-linear elliptic boundary value problem in one-dimensional and two-dimensional spaces respectively. We…

High Energy Physics - Theory · Physics 2007-05-23 Han-Ying Guo , Xiao-mei Ji , Yu-Qi Li , Ke Wu

We consider a damped linear hyperbolic system modelling the propagation of pressure waves in a network of pipes. Well-posedness is established via semi-group theory and the existence of a unique steady state is proven in the absence of…

Numerical Analysis · Mathematics 2016-05-11 Herbert Egger , Thomas Kugler

This paper deals with the fully parabolic chemotaxis-convection model with sensitivity functions for tumor angiogenesis, \begin{align*} \begin{cases} u_t=\Delta u-\nabla \cdot (u\chi_1(v)\nabla v) +\nabla \cdot (u\chi_2(w)\nabla w), &x \in…

Analysis of PDEs · Mathematics 2023-04-25 Yutaro Chiyo , Masaaki Mizukami

We investigated existence of global weak solutions for a system of chemotaxis type with nonlinear degenerate diffusion, arising in modelling Multiple Sclerosis disease. The model consists of three equations describing the evolution of…

Analysis of PDEs · Mathematics 2024-05-10 S. Fagioli , E. Radici , L. Romagnoli

Current approaches to genomic sequence modeling often struggle to align the inductive biases of machine learning models with the evolutionarily-informed structure of biological systems. To this end, we formulate a novel application of…

Machine Learning · Computer Science 2025-07-30 Raiyan R. Khan , Philippe Chlenski , Itsik Pe'er

We give an overview of analytical results concerned with chemotaxis systems where the signal is absorbed. We recall results on existence and properties of solutions for the prototypical chemotaxis-consumption model and various variants and…

Analysis of PDEs · Mathematics 2023-04-06 Johannes Lankeit , Michael Winkler

In this paper, we study diagonalizable hyperbolic systems in one space dimension. Based on a new gradient entropy estimate, we prove the global existence of a continuous solution, for large and nondecreasing initial data. Moreover, we show…

Mathematical Physics · Physics 2008-12-18 Ahmad El Hajj , Regis Monneau

Physics-informed neural network architectures have emerged as a powerful tool for developing flexible PDE solvers which easily assimilate data, but face challenges related to the PDE discretization underpinning them. By instead adapting a…

Numerical Analysis · Mathematics 2020-12-11 Ravi G. Patel , Indu Manickam , Nathaniel A. Trask , Mitchell A. Wood , Myoungkyu Lee , Ignacio Tomas , Eric C. Cyr

There is growing interest in developing mathematical models and appropriate numerical methods for problems involving networks formed by, essentially, one-dimensional (1D) domains joined by junctions. Examples include hyperbolic equations in…

Numerical Analysis · Mathematics 2017-08-08 Francesca Bellamoli , Lucas Omar Müller , Eleuterio Francisco Toro

A finite volume scheme for the (Patlak-) Keller-Segel model in two space dimensions with an additional cross-diffusion term in the elliptic equation for the chemical signal is analyzed. The main feature of the model is that there exists a…

Numerical Analysis · Mathematics 2012-08-02 Marianne Bessemoulin-Chatard , Ansgar Jüngel

In this paper, we studied phase-space analysis of a certain mathematical model of tumor growth with an immune responses and chemotherapy therapy. Mathematical modelling of this process is viewed as a potentially powerful tool in the…

Dynamical Systems · Mathematics 2018-03-15 Veli Shakhmurov , Akif Maharramov , Bunyad Shahmurzada

Semi-analytic models are a widely used approach to simulate galaxy properties within a cosmological framework, relying on simplified yet physically motivated prescriptions. They have also proven to be an efficient alternative for generating…

In this paper we present an explicit formula for the semigroup governing the solution to hyperbolic systems on a metric graph, satisfying general linear Kirchhoff's type boundary conditions. Further, we use this representation to establish…

Analysis of PDEs · Mathematics 2021-11-17 Jacek Banasiak , Adam Błoch

Embedding the data in hyperbolic spaces can preserve complex relationships in very few dimensions, thus enabling compact models and improving efficiency of machine learning (ML) algorithms. The underlying idea is that hyperbolic…

Machine Learning · Computer Science 2025-01-14 Vladimir Jaćimović

Hyperbolic spaces have recently gained momentum in the context of machine learning due to their high capacity and tree-likeliness properties. However, the representational power of hyperbolic geometry is not yet on par with Euclidean…

Machine Learning · Computer Science 2018-06-29 Octavian-Eugen Ganea , Gary Bécigneul , Thomas Hofmann

Generative network models are extremely useful for understanding the mechanisms that operate in network formation and are widely used across several areas of knowledge. However, when it comes to bipartite networks -- a class of network…

Physics and Society · Physics 2019-10-29 Demival Vasques Filho , Dion R. J. O'Neale