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Ion channels orchestrate the communication between cells and their environment. These are special proteins capable of changing their shape to allow ions to pass through membranes in response to stimuli like membrane tension. As the letters…

Biological Physics · Physics 2024-09-17 Uğur Çetiner

We propose a simple discrete stochastic model for calcium dynamics in living cells. Specifically, the calcium concentration distribution is assumed to give rise to a set of probabilities for the opening/closing of channels which release…

patt-sol · Physics 2009-10-31 Markus Baer , Martin Falcke , Herbert Levine , Lev S. Tsimring

In the quest of green energy, Solid Oxide Fuel Cells (SOFC) have drawn considerable attention for chemical-to-electric energy conversion. In the present paper, we report an enhancement of ionic conductivity in Cu2P2-xVxO7 by vanadium…

Selectivity filter is a gate in ion channels which are responsible for the selection and fast conduction of particular ions across the membrane (with high throughput rates of $10^8$ ions/sec and a high 1:$10^4$ discrimination rate between…

Biological Physics · Physics 2018-09-24 Amir Jalalinejad , Hassan Bassereh , Vahid Salari , Tapio Ala-Nissila , Achille Giacometti

In this article we address the three-dimensional modeling and simulation of biological ion channels using a continuum-based approach. Our multi-physics formulation self-consistently combines, to the best of our knowledge for the first time,…

Numerical Analysis · Mathematics 2015-09-25 Riccardo Sacco , Paolo Airoldi , Aurelio G. Mauri , Joseph W. Jerome

Efficient and safe energy storage technologies are essential for realizing a sustainable and electrified society. Among the key challenges, the design of superionic conductors for all-solid-state batteries often faces a fundamental…

Materials Science · Physics 2025-11-06 Rikuya Ishikawa , Kyohei Takae , Rei Kurita

Mechanosensitive ion nanochannels regulate transport by undergoing conformational changes within nanopores. However, achieving precise control over these conformational states remains a major challenge for both artificial soft or solid…

Chemical Physics · Physics 2026-01-06 Ke Zhou

Nanoporous membranes, leveraging their high-throughput characteristics, have been widely applied in fields such as molecular separation and energy conversion. Due to interpore interactions, besides the applied voltage and solution…

Soft Condensed Matter · Physics 2025-10-21 Hongwen Zhang , Bowen Ai , Zekun Gong , Tianyi Sui , Zuzanna S. Siwy , Yinghua Qiu

We explore the nematic ordering of the rod-like liquid crystals 5CB and 6CB, embedded into parallel-aligned nanochannels in mesoporous silicon and silica membranes as a function of mean channel radius (4.7<=R <=8.3 nm), and thus geometrical…

Soft Condensed Matter · Physics 2012-08-15 Sylwia Calus , Daniel Rau , Patrick Huber , Andriy V. Kityk

Understanding ion-transport under molecular confinement is essential for developing next-generation energy technologies, where ionic motion often occurs within nanoscale or angstrom-scale channels. In this study, we use the model system of…

Piezo1 ion channels are voltage-modulated, stretch-activated ion channels involved in a variety of important physiological and pathophysiological processes, as for example cardiovascular development and homeostasis. Since its discovery, it…

Quantitative Methods · Quantitative Biology 2025-05-20 Dennis Ogiermann , Abdulaziz Mohamed , Luigi E. Perotti , Daniel Balzani

The intricate role of shear viscosity and ion-pair relaxations on ionic conductivity mechanisms and the underlying changes induced by salt concentration ($c$) in organic liquid electrolytes remain poorly understood despite their widespread…

The large-conductance, calcium-activated potassium (BK) channel lacks the typical intracellular bundle-crossing gate present in most ion channels of the 6TM family. This observation, initially inferred from Ca$^{2+}$-free-pore accessibility…

Biomolecules · Quantitative Biology 2024-05-09 Lucia Coronel , Giovanni Di Muccio , Brad Rothberg , Alberto Giacomello , Vincenzo Carnevale

The ability of semipermeable membranes to selectively impede the transport of undesirable solutes is key to many applications. Yet, obtaining a systematic understanding of how membrane structure affects selectivity remains elusive due to…

Soft Condensed Matter · Physics 2020-01-03 Hessam Malmir , Razi Epsztein , Menachem Elimelech , Amir Haji-Akbari

Voltage-dependent ion channels determine the electric properties of axonal cell membranes. They not only allow the passage of ions through the cell membrane but also contribute to an additional charging of the cell membrane resulting in the…

Neurons and Cognition · Quantitative Biology 2009-11-13 G. Schmid , I. Goychuk , P. Hanggi

We consider ion transport through protein ion channels in lipid membranes and water-filled nanopores in silicon films. It is known that, due to the large ratio of dielectric constants of water and the surrounding material, an ion placed…

Soft Condensed Matter · Physics 2009-11-11 J. Zhang , A. Kamenev , B. I. Shklovskii

Ionic Coulomb blockade in nanopores is a phenomenon that shares some similarities but also differences with its electronic counterpart. Here, we investigate extensively this phenomenon using all-atom molecular dynamics of ionic transport…

Mesoscale and Nanoscale Physics · Physics 2017-12-27 Hiroya Tanaka , Hideo Iizuka , Yuriy V. Pershin , Massimiliano Di Ventra

The influence of the salts KCl, NaCl, and NaI at molar concentrations on the {\alpha}-helical folding kinetics of the alanine-based oligopeptide Ace-AEAAAKEAAAKA-Nme is investigated by means of (explicit-water) molecular dynamics…

Soft Condensed Matter · Physics 2010-12-08 Yann von Hansen , Immanuel Kalcher , Joachim Dzubiella

Nanofluidic transport is ubiquitous in natural systems from extra-cellular communication in biology to geological phenomena, and promotes the emergence of new technologies such as energy harvesting and water desalination. While experimental…

Soft Condensed Matter · Physics 2026-03-23 Aymeric Allemand , Anne-Laure Biance , Christophe Ybert , Laurent Joly

We consider an anisotropically two-dimensional diffusion of a charged molecule (particle) through a large biological channel under an external voltage. The channel is modeled as a cylinder of three structure parameters: radius, length, and…

Soft Condensed Matter · Physics 2016-02-01 V. T. N. Huyen , Le Bin Ho , Vu Cong Lap , V. Lien Nguyen
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