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Deep Generative Models (DGMs) are versatile tools for learning data representations while adequately incorporating domain knowledge such as the specification of conditional probability distributions. Recently proposed DGMs tackle the…

Machine Learning · Computer Science 2024-01-30 Romain Lopez , Jan-Christian Huetter , Ehsan Hajiramezanali , Jonathan Pritchard , Aviv Regev

While graphical models for continuous data (Gaussian graphical models) and discrete data (Ising models) have been extensively studied, there is little work on graphical models linking both continuous and discrete variables (mixed data),…

Machine Learning · Statistics 2016-08-22 Jie Cheng , Tianxi Li , Elizaveta Levina , Ji Zhu

We introduce OpenRAND, a C++17 library aimed at facilitating reproducible scientific research through the generation of statistically robust and yet replicable random numbers. OpenRAND accommodates single and multi-threaded applications on…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-01 Shihab Shahriar Khan , Bryce Palmer , Christopher Edelmaierd , Hasan Metin Aktulga

We present a comparison of several modern C++ libraries providing high-level interfaces for programming multi- and many-core architectures on top of CUDA or OpenCL. The comparison focuses on the solution of ordinary differential equations…

Mathematical Software · Computer Science 2017-10-13 Denis Demidov , Karsten Ahnert , Karl Rupp , Peter Gottschling

Recently, Google proposes DDVM which for the first time demonstrates that a general diffusion model for image-to-image translation task works impressively well on optical flow estimation task without any specific designs like RAFT. However,…

Computer Vision and Pattern Recognition · Computer Science 2023-12-05 Qiaole Dong , Bo Zhao , Yanwei Fu

Ordinary differential equation models facilitate the understanding of cellular signal transduction and other biological processes. However, for large and comprehensive models, the computational cost of simulating or calibrating can be…

Quantitative Methods · Quantitative Biology 2023-11-29 Fabian Fröhlich , Daniel Weindl , Yannik Schälte , Dilan Pathirana , Łukasz Paszkowski , Glenn Terje Lines , Paul Stapor , Jan Hasenauer

Large language models (LLMs) have been proposed as powerful tools for detecting software vulnerabilities, where task-specific fine-tuning is typically employed to provide vulnerability-specific knowledge to the LLMs. However, existing…

Software Engineering · Computer Science 2025-07-22 Ruijun Feng , Hammond Pearce , Pietro Liguori , Yulei Sui

Solving arithmetic tasks is a simple and fundamental skill, yet modern Large Language Models (LLMs) have great difficulty with them. We introduce the Integrated Gated Calculator (IGC), a module that enables LLMs to perform arithmetic by…

Machine Learning · Computer Science 2025-01-03 Florian Dietz , Dietrich Klakow

Deep learning is a hierarchical inference method formed by subsequent multiple layers of learning able to more efficiently describe complex relationships. In this work, Deep Gaussian Mixture Models are introduced and discussed. A Deep…

Machine Learning · Statistics 2017-11-21 Cinzia Viroli , Geoffrey J. McLachlan

Deep neural networks have made breakthroughs in a wide range of visual understanding tasks. A typical challenge that hinders their real-world applications is that unknown samples may be fed into the system during the testing phase, but…

Computer Vision and Pattern Recognition · Computer Science 2021-02-10 Xin Sun , Chi Zhang , Guosheng Lin , Keck-Voon Ling

Quantum trajectory methods can be used for a wide range of open quantum systems to solve the master equation by unraveling the density operator evolution into individual stochastic trajectories in Hilbert space. This C++ class library…

Quantum Physics · Physics 2009-10-30 Ruediger Schack , Todd A. Brun

Matrix Graph Grammars (MGG) is a novel approach to the study of graph dynamics ([15]). In the present contribution we look at MGG as a formal grammar and as a model of computation, which is a necessary step in the more ambitious program of…

Discrete Mathematics · Computer Science 2009-11-16 Pedro Pablo Perez Velasco

Probabilistic graphical models (PGMs) provide a compact representation of knowledge that can be queried in a flexible way: after learning the parameters of a graphical model once, new probabilistic queries can be answered at test time…

We describe OpenFCI, an open source implementation of the full configuration-interaction method (FCI) for two-dimensional quantum dots with optional use of effective renormalized interactions. The code is written in C++ and is available…

Mesoscale and Nanoscale Physics · Physics 2008-10-16 Simen Kvaal

This paper describes NCRF++, a toolkit for neural sequence labeling. NCRF++ is designed for quick implementation of different neural sequence labeling models with a CRF inference layer. It provides users with an inference for building the…

Computation and Language · Computer Science 2018-06-19 Jie Yang , Yue Zhang

General Matrix Multiplication or GEMM kernels take centre place in high performance computing and machine learning. Recent NVIDIA GPUs include GEMM accelerators, such as NVIDIA's Tensor Cores. Their exploitation is hampered by the…

Mathematical Software · Computer Science 2021-11-23 Thomas Faingnaert , Tim Besard , Bjorn De Sutter

MiMiC is a flexible and efficient framework for multiscale simulations in which different subsystems are treated by individual client programs. In this work, we present a new interface with OpenMM to be used as an MM client program and we…

Chemical Physics · Physics 2025-02-11 Andrea Levy , Andrej Antalík , Jógvan Magnus Haugaard Olsen , Ursula Rothlisberger

Large Language Models (LLM) have become sophisticated enough that complex computer programs can be created through interpretation of plain English sentences and implemented in a variety of modern languages such as Python, Java Script, C++…

Software Engineering · Computer Science 2023-09-04 Simon Thorne

Structured Cartesian grids are a fundamental component in numerical simulations. Although these grids facilitate straightforward discretization schemes, their na\"{i}ve use in sparse domains leads to excessive memory overhead and…

Computational Engineering, Finance, and Science · Computer Science 2025-12-15 Fan Gu , Xiangyu Hu

Gaussian Mixture Models (GMM) do not adapt well to curved and strongly nonlinear data. However, we can use Gaussians in the curvilinear coordinate systems to solve this problem. Moreover, such a solution allows for the adaptation of…

Computer Vision and Pattern Recognition · Computer Science 2023-04-05 Krzysztof Byrski , Przemysław Spurek , Jacek Tabor
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