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Bipartite graphs are widely used to model relationships between entities of different types, where nodes are divided into two disjoint sets. Similarity search, a fundamental operation that retrieves nodes similar to a given query node,…

Data Structures and Algorithms · Computer Science 2025-12-15 Xi Ou , Longlong Lin , Zeli Wang , Pingpeng Yuan , Rong-Hua Li

Graph similarity search has received considerable attention in many applications, such as bioinformatics, data mining, pattern recognition, and social networks. Existing methods for this problem have limited scalability because of the huge…

Databases · Computer Science 2016-12-30 Xiaoyang Chen , Hongwei Huo , Jun Huan , Jeffrey Scott Vitter

Bipartite graphs are widely used to model relationships between two types of entities. Community search retrieves densely connected subgraphs containing a query vertex, which has been extensively studied on unipartite graphs. However,…

Databases · Computer Science 2020-11-18 Kai Wang , Wenjie Zhang , Xuemin Lin , Ying Zhang , Lu Qin , Yuting Zhang

Determining whether two graphs are isomorphic is a fundamental problem with practical applications in areas such as molecular chemistry or social network analysis, yet it remains a challenging task, with exact solutions often being…

Social media data are often modeled as heterogeneous graphs with multiple types of nodes and edges. We present a discovery algorithm that first chooses a "background" graph based on a user's analytical interest and then automatically…

Social and Information Networks · Computer Science 2021-02-19 Subhasis Dasgupta , Amarnath Gupta

We give the first fully dynamic algorithm which maintains a $(1-\epsilon)$-approximate densest subgraph in worst-case time $\text{poly}(\log n, \epsilon^{-1})$ per update. Dense subgraph discovery is an important primitive for many…

Data Structures and Algorithms · Computer Science 2020-03-12 Saurabh Sawlani , Junxing Wang

The vast amounts of data used in social, business or traffic networks, biology and other natural sciences are often managed in graph-based data sets, consisting of a few thousand up to billions and trillions of vertices and edges,…

Databases · Computer Science 2021-10-22 Matthias Hauck , Ismail Oukid , Holger Fröning

Graph comparison is fundamentally important for many applications such as the analysis of social networks and biological data and has been a significant research area in the pattern recognition and pattern analysis domains. Nowadays, the…

Data Structures and Algorithms · Computer Science 2015-02-27 Hamida Seba , Sofiane Lagraa , Elsen Ronando

We report on the phase transition of finding a complete subgraph, of specified dimensions, in a bipartite graph. Finding a complete subgraph in a bipartite graph is a problem that has growing attention in several domains, including…

Artificial Intelligence · Computer Science 2016-09-20 Roberto Alonso , Raúl Monroy , Eduardo Aguirre

Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

Data Structures and Algorithms · Computer Science 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

In matrix factorization, available graph side-information may not be well suited for the matrix completion problem, having edges that disagree with the latent-feature relations learnt from the incomplete data matrix. We show that removing…

Machine Learning · Computer Science 2020-12-18 Jonathan Strahl , Jaakko Peltonen , Hiroshi Mamitsuka , Samuel Kaski

We study the problem of finding and monitoring fixed-size subgraphs in a continually changing large-scale graph. We present the first approach that (i) performs worst-case optimal computation and communication, (ii) maintains a total memory…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-13 Khaled Ammar , Frank McSherry , Semih Salihoglu , Manas Joglekar

Finding dense substructures in a graph is a fundamental graph mining operation, with applications in bioinformatics, social networks, and visualization to name a few. Yet most standard formulations of this problem (like clique, quasiclique,…

Social and Information Networks · Computer Science 2015-03-10 Ahmet Erdem Sariyuce , C. Seshadhri , Ali Pinar , Umit V. Catalyurek

We study the problem of estimating the value of sums of the form $S_p \triangleq \sum \binom{x_i}{p}$ when one has the ability to sample $x_i \geq 0$ with probability proportional to its magnitude. When $p=2$, this problem is equivalent to…

Data Structures and Algorithms · Computer Science 2016-01-19 Maryam Aliakbarpour , Amartya Shankha Biswas , Themistoklis Gouleakis , John Peebles , Ronitt Rubinfeld , Anak Yodpinyanee

\emph{Uncertain Graph} (also known as \emph{Probabilistic Graph}) is a generic model to represent many real\mbox{-}world networks from social to biological. In recent times analysis and mining of uncertain graphs have drawn significant…

Databases · Computer Science 2021-06-16 Suman Banerjee

Graph pattern matching is a fundamental problem encountered by many common graph mining tasks and the basic building block of several graph mining systems. This paper explores for the first time how to proactively prune graphs to speed up…

Databases · Computer Science 2024-03-05 Juelin Liu , Sandeep Polisetty , Hui Guan , Marco Serafini

Protein-protein interaction (PPI) networks, providing a comprehensive landscape of protein interacting patterns, enable us to explore biological processes and cellular components at multiple resolutions. For a biological process, a number…

Molecular Networks · Quantitative Biology 2016-04-13 Xiuli Ma , Guangyu Zhou , Jingjing Wang , Jian Peng , Jiawei Han

Subgraph matching is the problem of finding all the occurrences of a small graph, called the query, in a larger graph, called the target. Although the problem has been widely studied in simple graphs, few solutions have been proposed for…

Graph pattern matching involves finding exact or approximate matches for a query subgraph in a larger graph. It has been studied extensively and has strong applications in domains such as computer vision, computational biology, social…

Databases · Computer Science 2012-08-02 Sutanay Choudhury , Lawrence Holder , George Chin , John Feo

We study the detection and the reconstruction of a large very dense subgraph in a social graph with $n$ nodes and $m$ edges given as a stream of edges, when the graph follows a power law degree distribution, in the regime when $m=O(n. \log…

Data Structures and Algorithms · Computer Science 2023-06-22 Claire Mathieu , Michel de Rougemont