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The drive for reproducibility in the computational sciences has provoked discussion and effort across a broad range of perspectives: technological, legislative/policy, education, and publishing. Discussion on these topics is not new, but…

Quantitative Methods · Quantitative Biology 2018-10-10 Daniel G. Hurley , Joseph Cursons , Matthew Faria , David M. Budden , Vijay Rajagopal , Edmund J. Crampin

This paper is a survey dedicated to the analogy between the notions of {\it complexity} in theoretical computer science and {\it energy} in physics. This analogy is not metaphorical: I describe three precise mathematical contexts, suggested…

Computational Complexity · Computer Science 2015-06-15 Yuri I. Manin

While evolution has inspired algorithmic methods of heuristic optimisation, little has been done in the way of using concepts of computation to advance our understanding of salient aspects of biological phenomena. We argue that under…

Computational Complexity · Computer Science 2012-06-05 Hector Zenil , James A. R. Marshall

Computational devices combining two or more different parts, one controlling the operation of the other, for example, derive their power from the interaction, in addition to the capabilities of the parts. Non-classical computation has…

Emerging Technologies · Computer Science 2012-10-03 Susan Stepney , Viv Kendon , Peter Hines , Angelika Sebald

Quantum computation is a promising emerging technology which, compared to conventional computation, allows for substantial speed-ups e.g. for integer factorization or database search. However, since physical realizations of quantum…

Quantum Physics · Physics 2018-06-07 Alwin Zulehner , Robert Wille

Inspired by connections to two dimensional quantum theory, we define several models of computation based on permuting distinguishable particles (which we call balls), and characterize their computational complexity. In the quantum setting,…

Quantum Physics · Physics 2016-10-24 Scott Aaronson , Adam Bouland , Greg Kuperberg , Saeed Mehraban

Many proposed applications of neural networks in machine learning, cognitive/brain science, and society hinge on the feasibility of inner interpretability via circuit discovery. This calls for empirical and theoretical explorations of…

Artificial Intelligence · Computer Science 2025-04-02 Federico Adolfi , Martina G. Vilas , Todd Wareham

This paper concerns algorithms that give correct answers with (asymptotic) density $1$. A dense description of a function $g : \omega \to \omega$ is a partial function $f$ on $\omega$ such that $\left\{n : f(n) = g(n)\right\}$ has density…

Logic · Mathematics 2018-11-20 Eric P. Astor , Denis R. Hirschfeldt , Carl G. Jockusch

We outline the construction of a molecular system that could, in principle, implement a thermodynamically reversible Universal Turing Machine (UTM). By proposing a concrete-albeit idealised-design and operational protocol, we reveal…

Statistical Mechanics · Physics 2021-02-09 Rory A. Brittain , Nick S. Jones , Thomas E. Ouldridge

Fixed point iterations are known to generate chaos, for some values in their parameter range. It is an established fact that Turing Machines are fixed point iterations. However, as these Machines operate in integer space, the standard…

Computational Complexity · Computer Science 2015-07-06 Nabarun Mondal , Partha P. Ghosh

Wolfram's Principle of Computational Equivalence (PCE) implies that universal complexity abounds in nature. This paper comprises three sections. In the first section we consider the question why there are so many universal phenomena around.…

Logic in Computer Science · Computer Science 2012-11-09 Joost J. Joosten

The quest to understand consciousness, once the purview of philosophers and theologians, is now actively pursued by scientists of many stripes. We examine consciousness from the perspective of theoretical computer science (TCS), a branch of…

Artificial Intelligence · Computer Science 2022-07-06 Lenore Blum , Manuel Blum

We investigate the relationship between computation and spacetime structure, focussing on the role of closed timelike curves (CTCs) in promoting computational speedup. We note first that CTC traversal can be interpreted in two distinct…

General Relativity and Quantum Cosmology · Physics 2011-03-08 Mike Stannett

We present a simple yet general and efficient approach to representation of computational meshes. Meshes are represented as sets of mesh entities of different topological dimensions and their incidence relations. We discuss a…

Numerical Analysis · Mathematics 2012-05-15 Anders Logg

Causal models, also known as Structural Equation Models (SEM), are a well-known formalism for representing and reasoning about causal dependencies between events. In this paper, we show that Temporal SEMs (TSEMs), which extend SEMs to…

Formal Languages and Automata Theory · Computer Science 2026-05-08 Maksim Gladyshev , Natasha Alechina , Brian Logan

At a first glance the Theory of computation relies on potential infinity and an organization aimed at solving a problem. Under such aspect it is like Mendeleev theory of chemistry. Also its theoretical development reiterates that of this…

Logic · Mathematics 2021-01-15 Antonino Drago

The hardware and software foundations laid in the first half of the 20th Century enabled the computing technologies that have transformed the world, but these foundations are now under siege. The current computing paradigm, which is the…

Generic computability has been studied in group theory and we now study it in the context of classical computability theory. A set A of natural numbers is generically computable if there is a partial computable function f whose domain has…

Group Theory · Mathematics 2014-02-26 Carl G. Jockusch , Paul E. Schupp

Axiomatic approach has demonstrated its power in mathematics. The main goal of this preprint is to show that axiomatic methods are also very efficient for computer science. It is possible to apply these methods to many problems in computer…

Logic · Mathematics 2007-05-23 Mark Burgin

The machinery of the human brain -- analog, probabilistic, embodied -- can be characterized computationally, but what machinery confers what computational powers? Any such system can be abstractly cast in terms of two computational…

Neurons and Cognition · Quantitative Biology 2020-08-14 Richard Granger