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Two-state cooperativity is an important characteristic in protein folding. It is defined by a depletion of states lying energetically between folded and unfolded conformations. While there are different ways to test for two-state…

Biomolecules · Quantitative Biology 2015-05-28 Tristan Bereau , Markus Deserno , Michael Bachmann

In computer graphics, smooth data reconstruction on 2D or 3D manifolds usually refers to subdivision problems. Such a method is only valid based on dense sample points. The manifold usually needs to be triangulated into meshes (or patches)…

Numerical Analysis · Mathematics 2011-05-30 Li Chen , Feng Luo

Spatial and momentum correlations are important in the analysis of the quantum states and different phases of trapped ultracold atom systems as a function of the strength of interatomic interactions. Identification and understanding of…

Quantum Gases · Physics 2017-12-08 Benedikt B. Brandt , Constantine Yannouleas , Uzi Landman

The aim of this paper is to investigate superresolution in deconvolution driven by sparsity priors. The observed signal is a convolution of an original signal with a continuous kernel.With the prior knowledge that the original signal can be…

Optimization and Control · Mathematics 2025-03-20 Alexandra Koulouri , Pia Heins , Martin Burger

Microstructure reconstruction serves as a crucial foundation for establishing Process-Structure-Property (PSP) relationship in material design. Confronting the limitations of variational autoencoder and generative adversarial network within…

Computational Engineering, Finance, and Science · Computer Science 2023-11-30 Xianrui Lyu , Xiaodan Ren

Dual energy CT (DECT) enhances tissue characterization because it can produce images of basis materials such as soft-tissue and bone. DECT is of great interest in applications to medical imaging, security inspection and nondestructive…

Medical Physics · Physics 2018-09-05 Qiaoqiao Ding , Tianye Niu , Xiaoqun Zhang , Yong Long

Herein the topics of (natural) gradient descent, data decorrelation, and approximate methods for backpropagation are brought into a common discussion. Natural gradient descent illuminates how gradient vectors, pointing at directions of…

Machine Learning · Computer Science 2025-08-26 Nasir Ahmad

We present a new method for consistent, joint analysis of the pre- and post-reconstruction two-point functions of the BOSS survey. The post-reconstruction correlation function is used to accurately measure the distance-redshift relation and…

Cosmology and Nongalactic Astrophysics · Physics 2022-02-09 Shi-Fan Chen , Zvonimir Vlah , Martin White

We use machine learning to classify rational two-dimensional conformal field theories. We first use the energy spectra of these minimal models to train a supervised learning algorithm. We find that the machine is able to correctly predict…

Strongly Correlated Electrons · Physics 2021-07-13 En-Jui Kuo , Alireza Seif , Rex Lundgren , Seth Whitsitt , Mohammad Hafezi

We present a new phase field crystal model for structural transformations in multi-component alloys. The formalism builds upon the two-point correlation kernel developed in Greenwood et al. for describing structural transformations in pure…

Materials Science · Physics 2015-06-12 Nana Ofori-Opoku , Vahid Fallah , Michael Greenwood , Shahrzad Esmaeili , Nikolas Provatas

Several real-world and abstract structures and systems are characterized by marked hierarchy to the point of being expressed as trees. Because the study of these entities often involves sampling (or discovering) the tree nodes in a specific…

Physics and Society · Physics 2022-04-18 Alexandre Benatti , Luciano da F. Costa

The revolution in materials in the past century was built on a knowledge of the atomic arrangements and the structure-property relationship. The sine qua non for obtaining quantitative structural information is single crystal…

Computational Physics · Physics 2023-12-27 Gabe Guo , Judah Goldfeder , Ling Lan , Aniv Ray , Albert Hanming Yang , Boyuan Chen , Simon JL Billinge , Hod Lipson

Dominant features of spatial data are connected structures or patterns that emerge from location-based variation and manifest at specific scales or resolutions. To identify dominant features, we propose a sequential application of…

Methodology · Statistics 2020-12-17 Roman Flury , Florian Gerber , Bernhard Schmid , Reinhard Furrer

The reconstruction of real-world surfaces is on high demand in various applications. Most existing reconstruction approaches apply 3D scanners for creating point clouds which are generally sparse and of low density. These points clouds will…

Computer Vision and Pattern Recognition · Computer Science 2021-03-01 Rajat Sharma , Tobias Schwandt , Christian Kunert , Steffen Urban , Wolfgang Broll

Structural defects within amorphous packings of symmetric particles can be characterized using a machine learning approach that incorporates structure functions of radial distances and angular arrangement. This yields a scalar field,…

Soft Condensed Matter · Physics 2019-03-06 Matt Harrington , Andrea J. Liu , Douglas J. Durian

While invaluable for many computer vision applications, decomposing a natural image into intrinsic reflectance and shading layers represents a challenging, underdetermined inverse problem. As opposed to strict reliance on conventional…

Computer Vision and Pattern Recognition · Computer Science 2018-09-03 Qingnan Fan , Jiaolong Yang , Gang Hua , Baoquan Chen , David Wipf

Natural materials often feature a combination of soft and stiff phases, arranged to achieve excellent mechanical properties, such as high strength and toughness. Many natural materials have even independently evolved to have similar…

Soft Condensed Matter · Physics 2025-07-03 Chelsea Fox , Kyrillos Bastawros , Tommaso Magrini , Chiara Daraio

Objective. Dual-energy computed tomography (DECT) has the potential to improve contrast, reduce artifacts and the ability to perform material decomposition in advanced imaging applications. The increased number or measurements results with…

Image and Video Processing · Electrical Eng. & Systems 2022-03-14 Alessandro Perelli , Suxer Alfonso Garcia , Alexandre Bousse , Jean-Pierre Tasu , Nikolaos Efthimiadis , Dimitris Visvikis

Modeling deformation twin nucleation in magnesium has proven to be a challenging task. In particular, the absence of a heterogeneous twin nucleation model which provides accurate energetic descriptions for twin-related structures belies a…

Materials Science · Physics 2025-10-14 Enver Kapan , Sertan Alkan , C. Can Aydıner , Jeremy K. Mason

We consider a phenomenological model for a coupling between the dark matter and dark energy fluids and investigate the sensitivity of a weak lensing measurement for constraining the size of this coupling term. Physically, the functional…