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In computational biochemistry and biophysics, understanding the role of electrostatic interactions is crucial for elucidating the structure, dynamics, and function of biomolecules. The Poisson-Boltzmann (PB) equation is a foundational tool…

Biomolecules · Quantitative Biology 2024-10-08 Yongxian Wu , Qiang Zhu , Ray Luo

An analytical study of the charged particle dynamics in the presence of an elliptically polarized electromagnetic wave and a uniform axial magnetic field, is presented. It is found that for $g\omega_{0}/ \omega' = \pm 1$, maximum energy…

Plasma Physics · Physics 2023-12-12 Shivam Kumar Mishra , Sarveshwar Sharma , Sudip Sengupta

We present an implementation of the fast multipole method for computing coulombic electrostatic and polarization forces from polarizable force-fields based on induced point dipole moments. We demonstrate the expected $O(N)$ scaling of that…

Chemical Physics · Physics 2015-06-22 Jonathan P. Coles , Michel Masella

Reciprocal space methods for solving Poisson's equation for finite charge distributions are investigated. Improvements to previous proposals are presented, and their performance is compared in the context of a real-space density functional…

Computational Physics · Physics 2007-05-23 Alberto Castro , Angel Rubio , M. J. Stott

Solutions of the linearized Vlasov-Poisson equations for the electric field radiated by a time varying point charge in a three-dimensional, unbounded, spatially homogeneous plasma with a uniform background magnetic field and a uniform…

Plasma Physics · Physics 2015-06-04 John J. Podesta

A better understanding of interfacial mechanisms is needed to improve the performances of electrochemical devices. Yet, simulating an electrode surface at fixed electrolyte composition remains a challenge. Here we apply a finite electric…

Materials Science · Physics 2019-11-13 Thomas Dufils , Guillaume Jeanmairet , Benjamin Rotenberg , Michiel Sprik , Mathieu Salanne

We present an efficient and robust semi-analytical formulation to compute the electric potential due to arbitrary-located point electrodes in three-dimensional cylindrically stratified media, where the radial thickness and the medium…

Computational Physics · Physics 2015-06-22 Haksu Moon , Fernando L. Teixeira , Burkay Donderici

In this work, we present a novel family of explicit relaxation Particle-in-Cell (ER-PIC) methods for the Vlasov-Poisson equation with a strong magnetic field. These schemes achieve exact energy conservation by combining a splitting…

Numerical Analysis · Mathematics 2026-03-31 Lina Wang , Bin Wang

Global particle-in-cell (PIC) simulations of pulsar magnetospheres are performed with a volume, surface and pair production-based plasma injection schemes to systematically investigate the transition between electrosphere and force-free…

High Energy Astrophysical Phenomena · Physics 2024-10-16 Fábio Cruz , Thomas Grismayer , Alexander Y. Chen , Anatoly Spitkovsky , Ricardo A. Fonseca , Luis O. Silva

Closed-form, analytical approximations for electrostatic properties of molecules are of unique value, as these can provide computational speed, versatility, and physical insight. Here, we derive a simple, closed-form formula for the…

Chemical Physics · Physics 2022-03-14 Dan Folescu , Alexey V. Onufriev

Constitutive modeling of dielectric elastomers has been of long standing interest in mechanics. Over the last two decades rigorous constitutive models have been developed that couple the electrical response of these polymers with large…

Soft Condensed Matter · Physics 2021-10-19 Matthew Grasinger , Kaushik Dayal , Gal deBotton , Prashant K. Purohit

Classical electrodynamics uses a dielectric constant to describe the polarization response of electromechanical systems to changes in an electric field. We generalize that description to include a wide variety of responses to changes in the…

Statistical Mechanics · Physics 2021-09-10 Yiwei Wang , Chun Liu , Bob Eisenberg

The Poisson-Boltzmann equation (PBE) is an implicit solvent continuum model for calculating the electrostatic potential and energies of ionic solvated biomolecules. However, its numerical solution remains a significant challenge due strong…

Numerical Analysis · Mathematics 2023-06-13 Cleophas Kweyu , Venera Khoromskaia , Boris Khoromskij , Matthias Stein , Peter Benner

In Aristotelian Electrodynamics (AE), due to radiation over-damping, the velocity rather than the acceleration of a charge is determined by the local electromagnetic field. Treating electrons and positrons separately, AE seems to give a…

High Energy Astrophysical Phenomena · Physics 2013-03-19 Andrei Gruzinov

Particle-in-cell with Monte Carlo collisions (PIC/MCC) is a fully kinetic, particle based numerical simulation method with increasing popularity in the field of low temperature gas discharge physics. Already in its simplest form…

Plasma Physics · Physics 2022-06-15 Mate Vass , Peter Palla , Peter Hartmann

In high-temperature plasma physics, a strong magnetic field is usually used to confine charged particles. Therefore, for studying the classical mathematical models of the physical problems it is needed to consider the effect of external…

Numerical Analysis · Mathematics 2023-10-11 Anjiao Gu , Yajuan Sun

A common way to analyze electrostatic microelectromechanical systems (MEMS) actuators is to use their energy-displacement landscape. Here, we describe an alternative approach to analyze electrostatic MEMS actuators using their energy-charge…

Applied Physics · Physics 2020-10-26 Raghuram Tattamangalam Raman , Arvind Ajoy , Revathy Padmanabhan

The dynamics of the electrons for a molecule in solution is coupled to the dynamics of its polarizable environment, i.e., the solvent. To theoretically investigate such electronic dynamics, we have recently developed equations of motion…

Chemical Physics · Physics 2017-02-16 Silvio Pipolo , Stefano Corni , Roberto Cammi

We present a method that gives highly accurate electrostatic potentials for systems where we have periodic boundary conditions in two spatial directions but free boundary conditions in the third direction. These boundary conditions are…

Materials Science · Physics 2009-11-13 Luigi Genovese , Thierry Deutsch , Stefan Goedecker

We consider the classical Cauchy problem for a system of equations describing 3D arbitrary electrostatic oscillations of the cold plasma and introduce an iteration procedure that allows estimating the blow-up time from below. This procedure…

Analysis of PDEs · Mathematics 2023-03-29 Olga Rozanova
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