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Graph reordering is a powerful technique to increase the locality of the representations of graphs, which can be helpful in several applications. We study how the technique can be used to improve compression of graphs and inverted indexes.…

Data Structures and Algorithms · Computer Science 2017-09-04 Laxman Dhulipala , Igor Kabiljo , Brian Karrer , Giuseppe Ottaviano , Sergey Pupyrev , Alon Shalita

We establish connections between the Transformer architecture, originally introduced for natural language processing, and Graph Neural Networks (GNNs) for representation learning on graphs. We show how Transformers can be viewed as message…

Machine Learning · Computer Science 2025-06-30 Chaitanya K. Joshi

We extend the powerful Pullback-Pushout (PBPO) approach for graph rewriting with strong matching. Our approach, called \pbpostrong, exerts more control over the embedding of the pattern in the host graph, which is important for a large…

Logic in Computer Science · Computer Science 2021-06-28 Roy Overbeek , Jörg Endrullis , Aloïs Rosset

In recent years, new neural network architectures designed to operate on graph-structured data have pushed the state-of-the-art in the field. A large set of these architectures utilize a form of classical random walks to diffuse…

Quantum Physics · Physics 2018-06-18 Stefan Dernbach , Arman Mohseni-Kabir , Siddharth Pal , Don Towsley , Miles Gepner

Message passing on a factor graph is a powerful paradigm for the coding of approximate inference algorithms for arbitrarily graphical large models. The notion of a factor graph fragment allows for compartmentalization of algebra and…

Machine Learning · Statistics 2020-12-14 L. Maestrini , M. P. Wand

So far, a very large amount of work in Natural Language Processing (NLP) rely on trees as the core mathematical structure to represent linguistic informations (e.g. in Chomsky's work). However, some linguistic phenomena do not cope properly…

Computation and Language · Computer Science 2013-02-27 Guillaume Bonfante , Bruno Guillaume

Nonstandard graphs have been defined and examined in prior works. The present work does the same for nonstandard digraphs. Since digraphs have more structure than do graphs, the present discussion requires more complicated definitions and…

Combinatorics · Mathematics 2009-04-28 A. H. Zemanian

We present a form of algebraic reasoning for computational objects which are expressed as graphs. Edges describe the flow of data between primitive operations which are represented by vertices. These graphs have an interface made of…

Logic in Computer Science · Computer Science 2010-07-23 Lucas Dixon , Ross Duncan , Aleks Kissinger

The behavior of complex systems is determined not only by the topological organization of their interconnections but also by the dynamical processes taking place among their constituents. A faithful modeling of the dynamics is essential…

Physics and Society · Physics 2015-05-20 R. Lambiotte , R. Sinatra , J. -C. Delvenne , T. S. Evans , M. Barahona , V. Latora

Rewriting systems on words are very useful in the study of monoids. In good cases, they give finite presentations of the monoids, allowing their manipulation by a computer. Even better, when the presentation is confluent and terminating,…

Formal Languages and Automata Theory · Computer Science 2010-05-02 Samuel Mimram

The current understanding of deep neural networks can only partially explain how input structure, network parameters and optimization algorithms jointly contribute to achieve the strong generalization power that is typically observed in…

Machine Learning · Computer Science 2021-01-28 Francesco Craighero , Fabrizio Angaroni , Alex Graudenzi , Fabio Stella , Marco Antoniotti

A graph is reconstructible if it is determined up to isomorphism by the multiset of its proper induced subgraphs. The reconstruction conjecture postulates that every graph of order at least 3 is reconstructible. We show that interval graphs…

Combinatorics · Mathematics 2026-05-13 Irene Heinrich , Masashi Kiyomi , Yota Otachi , Pascal Schweitzer

Whereas string diagrams for strict monoidal categories are well understood, and have found application in several fields of Computer Science, graphical formalisms for non-strict monoidal categories are far less studied. In this paper, we…

Category Theory · Mathematics 2024-11-06 Paul Wilson , Dan Ghica , Fabio Zanasi

The Burrows-Wheeler Transform is a string transformation that plays a fundamental role for the design of self-indexing compressed data structures. Over the years, researchers have successfully extended this transformation outside the…

Data Structures and Algorithms · Computer Science 2019-02-05 Raffaele Giancarlo , Giovanni Manzini , Giovanna Rosone , Marinella Sciortino

We propose the use of hyperedge replacement graph grammars for factor graphs, or factor graph grammars (FGGs) for short. FGGs generate sets of factor graphs and can describe a more general class of models than plate notation, dynamic…

Machine Learning · Computer Science 2020-10-26 David Chiang , Darcey Riley

Deep neural network architectures often consist of repetitive structural elements. We introduce an approach that reveals these patterns and can be broadly applied to the study of deep learning. Similarly to how a power strip helps untangle…

Statistical Mechanics · Physics 2025-07-03 Donghee Lee , Hye-Sung Lee , Jaeok Yi

This paper introduces epistemic graphs as a generalization of the epistemic approach to probabilistic argumentation. In these graphs, an argument can be believed or disbelieved up to a given degree, thus providing a more fine--grained…

Artificial Intelligence · Computer Science 2020-01-15 Anthony Hunter , Sylwia Polberg , Matthias Thimm

Diagrammatic approaches to perturbation theory transformed the practicability of calculations in particle physics. In the case of extended theories of gravity, however, obtaining the relevant diagrammatic rules is non-trivial: we must…

High Energy Physics - Phenomenology · Physics 2024-10-22 Andrei Lazanu , Peter Millington , Sergio Sevillano Muñoz

A booming amount of information is continuously added to the Internet as structured and unstructured data, feeding knowledge bases such as DBpedia and Wikidata with billions of statements describing millions of entities. The aim of Question…

Computation and Language · Computer Science 2020-10-22 Anand Panchbhai , Tommaso Soru , Edgard Marx

The string-matching field has grown at a such complicated stage that various issues come into play when studying it: data structure and algorithmic design, database principles, compression techniques, architectural features, cache and…

Data Structures and Algorithms · Computer Science 2008-01-16 Paolo Ferragina