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We study the family of network models derived by requiring the expected properties of a graph ensemble to match a given set of measurements of a real-world network, while maximizing the entropy of the ensemble. Models of this type play the…

Statistical Mechanics · Physics 2009-11-10 Juyong Park , M. E. J. Newman

In graph learning, maps between graphs and their subgraphs frequently arise. For instance, when coarsening or rewiring operations are present along the pipeline, one needs to keep track of the corresponding nodes between the original and…

Machine Learning · Computer Science 2023-02-01 Marco Pegoraro , Riccardo Marin , Arianna Rampini , Simone Melzi , Luca Cosmo , Emanuele Rodolà

We describe a class of systems theory based neural networks called "Network Of Recurrent neural networks" (NOR), which introduces a new structure level to RNN related models. In NOR, RNNs are viewed as the high-level neurons and are used to…

Neural and Evolutionary Computing · Computer Science 2017-10-11 Chao-Ming Wang

A large variety of interacting complex systems are characterized by interactions occurring between more than two nodes. These systems are described by simplicial complexes. Simplicial complexes are formed by simplices (nodes, links,…

Physics and Society · Physics 2017-05-04 Ginestra Bianconi , Christoph Rahmede

Spectral clustering is a fast and popular algorithm for finding clusters in networks. Recently, Chaudhuri et al. (2012) and Amini et al.(2012) proposed inspired variations on the algorithm that artificially inflate the node degrees for…

Machine Learning · Statistics 2013-09-18 Tai Qin , Karl Rohe

Real networks are finite metric spaces. Yet the geometry induced by shortest path distances in a network is definitely not its only geometry. Other forms of network geometry are the geometry of latent spaces underlying many networks, and…

Real networks often grow through the sequential addition of new nodes that connect to older ones in the graph. However, many real systems evolve through the branching of fundamental units, whether those be scientific fields, countries, or…

Physics and Society · Physics 2020-06-30 Muhua Zheng , Guillermo García-Pérez , Marián Boguñá , M. Ángeles Serrano

The surrounding of a vertex in a network can be more or less symmetric. We derive measures of a specific kind of symmetry of a vertex which we call degree symmetry -- the property that many paths going out from a vertex have overlapping…

Data Analysis, Statistics and Probability · Physics 2007-05-23 Petter Holme

We use random matrix theory to study the spectrum of random geometric graphs, a fundamental model of spatial networks. Considering ensembles of random geometric graphs we look at short range correlations in the level spacings of the…

Physics and Society · Physics 2017-06-08 Carl P. Dettmann , Orestis Georgiou , Georgie Knight

We compute spectra of symmetric random matrices defined on graphs exhibiting a modular structure. Modules are initially introduced as fully connected sub-units of a graph. By contrast, inter-module connectivity is taken to be incomplete.…

Disordered Systems and Neural Networks · Physics 2009-08-24 G. Ergun , R. Kuehn

We study vacua and BPS spectra of canonical surface defects of class $\mathcal{S}$ theories in different decoupling limits using ADE spectral networks. In some regions of the IR moduli spaces of these 2d-4d systems, the mixing between 2d…

High Energy Physics - Theory · Physics 2017-02-15 Pietro Longhi , Chan Y. Park

The spectral gap of the graph Laplacian with Dirichlet boundary conditions is computed for the graphs of several communication networks at the IP-layer, which are subgraphs of the much larger global IP-layer network. We show that the…

Spectral Theory · Mathematics 2012-05-09 Alexander Tsiatas , Iraj Saniee , Onuttom Narayan , Matthew Andrews

Understanding how biological constraints shape neural computation is a central goal of computational neuroscience. Spatially embedded recurrent neural networks provide a promising avenue to study how modelled constraints shape the combined…

Neural and Evolutionary Computing · Computer Science 2024-09-27 Cornelia Sheeran , Andrew S. Ham , Duncan E. Astle , Jascha Achterberg , Danyal Akarca

Biomolecular networks have already found great utility in characterizing complex biological systems arising from pair-wise interactions amongst biomolecules. Here, we review how graph theoretical approaches can be applied not only for a…

Molecular Networks · Quantitative Biology 2018-12-03 Heeralal Janwa , Steven E. Massey , Julian Velev , Bud Mishra

Spectral subspaces of a linear dynamical system identify a large class of invariant structures that highlight/isolate the dynamics associated to select subsets of the spectrum. The corresponding notion for nonlinear systems is that of…

Dynamical Systems · Mathematics 2023-08-03 Gergely Buza

Many networks have nodes located in physical space, with links more common between closely spaced pairs of nodes. For example, the nodes could be wireless devices and links communication channels in a wireless mesh network. We describe…

Networking and Internet Architecture · Computer Science 2019-02-14 Carl Dettmann , Orestis Georgiou , Pete Pratt

Spectral singularities are certain points of the continuous spectrum of generic complex scattering potentials. We review the recent developments leading to the discovery of their physical meaning, consequences, and generalizations. In…

Quantum Physics · Physics 2015-04-07 Ali Mostafazadeh

Hypergraphs require higher-dimensional representations, which makes it more difficult to compute and interpret their spectral properties. This survey article uses the framework of hypermatrices to give an in-depth overview of the spectral…

History and Overview · Mathematics 2025-07-21 Shashwath S Shetty , K Arathi Bhat

A Sheaf Neural Network (SNN) is a type of Graph Neural Network (GNN) that operates on a sheaf, an object that equips a graph with vector spaces over its nodes and edges and linear maps between these spaces. SNNs have been shown to have…

We present a general computational theory of stem cell networks and their developmental dynamics. Stem cell networks are special cases of developmental control networks. Our theory generates a natural classification of all possible stem…

Other Quantitative Biology · Quantitative Biology 2016-07-18 Eric Werner
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