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Hierarchical Agglomerative Classification (HAC) with Ward's linkage has been widely used since its introduction in Ward (1963). The present article reviews the different extensions of the method to various input data and the constrained…

Methodology · Statistics 2019-09-25 Nathanaël Randriamihamison , Nathalie Vialaneix , Pierre Neuvial

We aim to improve segmentation through the use of machine learning tools during region agglomeration. We propose an active learning approach for performing hierarchical agglomerative segmentation from superpixels. Our method combines…

Computer Vision and Pattern Recognition · Computer Science 2015-03-13 Juan Nunez-Iglesias , Ryan Kennedy , Toufiq Parag , Jianbo Shi , Dmitri B. Chklovskii

We describe a robust, fast, and memory-efficient procedure that can cluster millions of structures derived from molecular dynamics simulations. The essence of the method is based on a peak-picking algorithm applied to three- and…

Biomolecules · Quantitative Biology 2015-12-15 Athanasios S. Baltzis , Panagiotis I. Koukos , Nicholas M. Glykos

Dendrograms are a way to represent evolutionary relationships between organisms. Nowadays, these are inferred based on the comparison of genes or protein sequences by taking into account their differences and similarities. The genetic…

Molecular Networks · Quantitative Biology 2019-09-09 Daniel Gamermann , Arnau Montagud , J. Alberto Conejero , Pedro Fernández de Córdoba , Javier F. Urchueguía

Inference in clustering is paramount to uncovering inherent group structure in data. Clustering methods which assess statistical significance have recently drawn attention owing to their importance for the identification of patterns in high…

Methodology · Statistics 2021-06-18 Debora Zava Bello , Marcio Valk , Gabriela Bettella Cybis

Land use as contained in geospatial databases constitutes an essential input for different applica-tions such as urban management, regional planning and environmental monitoring. In this paper, a hierarchical deep learning framework is…

Computer Vision and Pattern Recognition · Computer Science 2021-04-15 Chun Yang , Franz Rottensteiner , Christian Heipke

We present a technique for clustering categorical data by generating many dissimilarity matrices and averaging over them. We begin by demonstrating our technique on low dimensional categorical data and comparing it to several other…

Machine Learning · Statistics 2017-09-20 Saeid Amiri , Bertrand Clarke , Jennifer Clarke

Hierarchical structure is an essential part of complexity, important notion relevant for a wide range of applications ranging from biological population dynamics through robotics to social sciences. In this paper we propose a simple…

Populations and Evolution · Quantitative Biology 2015-06-26 Ivan Gotz , Isaak Rubinstein , Eugene Tsvetkov , Boris Zaltzman

Clustering is one of the major tasks in data mining. In the last few years, Clustering of spatial data has received a lot of research attention. Spatial databases are components of many advanced information systems like geographic…

Databases · Computer Science 2012-06-04 Mohamed A. El-Zawawy

Deep learning and especially the use of Deep Neural Networks (DNNs) provides impressive results in various regression and classification tasks. However, to achieve these results, there is a high demand for computing and storing resources.…

Machine Learning · Computer Science 2021-07-21 Erion-Vasilis Pikoulis , Christos Mavrokefalidis , Aris S. Lalos

Our interest is in multiplex network data with multiple network samples observed across the same set of nodes. Examples originate from a variety of fields, including brain connectivity, international trade networks, and social networks,…

Methodology · Statistics 2026-04-21 Yuren Zhou , Yuqi Gu , David B. Dunson

We propose a hierarchical graph neural network (GNN) model that learns how to cluster a set of images into an unknown number of identities using a training set of images annotated with labels belonging to a disjoint set of identities. Our…

Computer Vision and Pattern Recognition · Computer Science 2021-07-20 Yifan Xing , Tong He , Tianjun Xiao , Yongxin Wang , Yuanjun Xiong , Wei Xia , David Wipf , Zheng Zhang , Stefano Soatto

The time needed to apply a hierarchical clustering algorithm is most often dominated by the number of computations of a pairwise dissimilarity measure. Such a constraint, for larger data sets, puts at a disadvantage the use of all the…

Machine Learning · Computer Science 2022-09-14 Marek Gagolewski , Maciej Bartoszuk , Anna Cena

We propose a hierarchical correlation clustering method that extends the well-known correlation clustering to produce hierarchical clusters applicable to both positive and negative pairwise dissimilarities. Then, in the following, we study…

Machine Learning · Computer Science 2025-02-04 Morteza Haghir Chehreghani , Mostafa Haghir Chehreghani

Generative modeling and clustering are conventionally distinct tasks in machine learning. Variational Autoencoders (VAEs) have been widely explored for their ability to integrate both, providing a framework for generative clustering.…

Computer Vision and Pattern Recognition · Computer Science 2025-10-15 Jorge da Silva Gonçalves , Laura Manduchi , Moritz Vandenhirtz , Julia E. Vogt

Graph representation of structured data can facilitate the extraction of stereoscopic features, and it has demonstrated excellent ability when working with deep learning systems, the so-called Graph Neural Networks (GNNs). Choosing a…

Machine Learning · Computer Science 2021-01-27 Yingfang Yuan , Wenjun Wang , George M. Coghill , Wei Pang

This paper presents a novel approach to distinguish driving styles with respect to their energy efficiency. A distinct property of our method is that it relies exclusively on Global Positioning System (GPS) logs of drivers. This setting is…

Other Computer Science · Computer Science 2016-10-11 Michael Breuß , Laurent Hoeltgen , Ali Sharifi Boroujerdi , Ashkan Mansouri Yarahmadi

Hierarchical and k-medoids clustering are deterministic clustering algorithms based on pairwise distances. Using these same pairwise distances, we propose a novel stochastic clustering method based on random partition distributions. We call…

Methodology · Statistics 2021-06-08 David B. Dahl , Jacob Andros , J. Brandon Carter

We develop FedCluster--a novel federated learning framework with improved optimization efficiency, and investigate its theoretical convergence properties. The FedCluster groups the devices into multiple clusters that perform federated…

Machine Learning · Computer Science 2024-03-07 Cheng Chen , Ziyi Chen , Yi Zhou , Bhavya Kailkhura

We develop novel hierarchical reciprocal graphical models to infer gene networks from heterogeneous data. In the case of data that can be naturally divided into known groups, we propose to connect graphs by introducing a hierarchical prior…

Methodology · Statistics 2018-01-23 Yang Ni , Peter Mueller , Yitan Zhu , Yuan Ji