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As HPC system architectures and the applications running on them continue to evolve, the MPI standard itself must evolve. The trend in current and future HPC systems toward powerful nodes with multiple CPU cores and multiple GPU…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-20 Hui Zhou , Ken Raffenetti , Yanfei Guo , Thomas Gillis , Robert Latham , Rajeev Thakur

Regions of nested loops are a common feature of High Performance Computing (HPC) codes. In shared memory programming models, such as OpenMP, these structure are the most common source of parallelism. Parallelising these structures requires…

Programming Languages · Computer Science 2012-05-14 Adrian Jackson , Orestis Agathokleous

Asynchronous Many-task (AMT) runtime systems have gained increasing acceptance in the HPC community due to the performance improvements offered by fine-grained tasking runtime systems. At the same time, C++ standardization efforts are…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-09 Tianyi Zhang , Shahrzad Shirzad , Patrick Diehl , R. Tohid , Weile Wei , Hartmut Kaiser

We present a new code for astrophysical magneto-hydrodynamics specifically designed and optimized for high performance and scaling on modern and future supercomputers. We describe a novel hybrid OpenMP/MPI programming model that emerged…

Instrumentation and Methods for Astrophysics · Physics 2017-03-08 Peter Mendygral , Nick Radcliffe , Krishna Kandalla , David Porter , Brian J. O'Neill , Chris Nolting , Paul Edmon , Julius M. F. Donnert , Thomas W. Jones

MPI is the most widely used data transfer and communication model in High Performance Computing. The latest version of the standard, MPI-3, allows skilled programmers to exploit all hardware capabilities of the latest and future…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-30 Huan Zhou , Jose Gracia

We discuss the use of both MPI and OpenMP in the teaching of senior undergraduate and junior graduate classes in parallel programming. We briefly introduce the OpenMP standard and discuss why we have chosen to use it in parallel programming…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Yi Pan

We present our experience with the modernization on the GR-MHD code BHAC, aimed at improving its novel hybrid (MPI+OpenMP) parallelization scheme. In doing so, we showcase the use of performance profiling tools usable on x86 (Intel-based)…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-30 Salvatore Cielo , Oliver Porth , Luigi Iapichino , Anupam Karmakar , Hector Olivares , Chun Xia

Analytic, first-principles performance modeling of distributed-memory parallel codes is notoriously imprecise. Even for applications with extremely regular and homogeneous compute-communicate phases, simply adding communication time to…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-25 Ayesha Afzal , Georg Hager , Gerhard Wellein

We describe the design, implementation and performance of the new hybrid parallelization scheme in our Monte Carlo radiative transfer code SKIRT, which has been used extensively for modeling the continuum radiation of dusty astrophysical…

Instrumentation and Methods for Astrophysics · Physics 2017-05-16 Sam Verstocken , Dries Van De Putte , Peter Camps , Maarten Baes

The parallel and distributed processing are becoming de facto industry standard, and a large part of the current research is targeted on how to make computing scalable and distributed, dynamically, without allocating the resources on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-04-10 Rajendra Purohit , K R Chowdhary , S D Purohit

We investigate a parallelization strategy for dense matrix factorization (DMF) algorithms, using OpenMP, that departs from the legacy (or conventional) solution, which simply extracts concurrency from a multithreaded version of BLAS. This…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-20 Sandra Catalán , Adrián Castelló , Francisco D. Igual , Rafael Rodríguez-Sánchez , Enrique S. Quintana-Ortí

When training large machine learning models with many variables or parameters, a single machine is often inadequate since the model may be too large to fit in memory, while training can take a long time even with stochastic updates. A…

Machine Learning · Statistics 2014-06-19 Seunghak Lee , Jin Kyu Kim , Xun Zheng , Qirong Ho , Garth A. Gibson , Eric P. Xing

Message Passing Interface (MPI) is widely used to implement parallel programs. Although Windowsbased architectures provide the facilities of parallel execution and multi-threading, little attention has been focused on using MPI on these…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-05-31 Alaa Ismail Elnashar

Sustaining a large fraction of single GPU performance in parallel computations is considered to be the major problem of GPU-based clusters. In this article, this topic is addressed in the context of a lattice Boltzmann flow solver that is…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-01 Christian Feichtinger , Johannes Habich , Harald Koestler , Georg Hager , Ulrich Ruede , Gerhard Wellein

Developing an efficient code for large, multiscale astrophysical simulations is crucial in preparing the upcoming era of exascale computing. RAMSES is an astrophysical simulation code that employs parallel processing based on the Message…

Instrumentation and Methods for Astrophysics · Physics 2024-11-25 San Han , Yohan Dubois , Jaehyun Lee , Juhan Kim , Corentin Cadiou , Sukyoung K. Yi

The aim of parallel computing is to increase an application performance by executing the application on multiple processors. OpenMP is an API that supports multi platform shared memory programming model and shared-memory programs are…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-11-12 Vibha Rajput , Alok Katiyar

In high-performance computing (HPC), the demand for efficient parallel programming models has grown dramatically since the end of Dennard Scaling and the subsequent move to multi-core CPUs. OpenMP stands out as a popular choice due to its…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-21 Tal Kadosh , Niranjan Hasabnis , Timothy Mattson , Yuval Pinter , Gal Oren

The Message Passing Interface (MPI) is the prevalent programming model used on today's supercomputers. Therefore, MPI library developers are looking for the best possible performance (shortest run-time) of individual MPI functions across…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-05-30 Sascha Hunold , Alexandra Carpen-Amarie

A new parallel computing framework has been developed to use with general-purpose radiation transport codes. The framework was implemented as a C++ module that uses MPI for message passing. The module is significantly independent of…

Accelerator Physics · Physics 2012-02-13 M. A. Kostin , N. V. Mokhov , K. Niita

A Partitioned Global Address Space (PGAS) approach treats a distributed system as if the memory were shared on a global level. Given such a global view on memory, the user may program applications very much like shared memory systems. This…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-08 Huan Zhou , Yousri Mhedheb , Kamran Idrees , Colin W. Glass , José Gracia , Karl Fürlinger , Jie Tao