Related papers: How do Ontology Mappings Change in the Life Scienc…

Microbiology research has access to a very large amount of public information on the habitats of microorganisms. Many areas of microbiology research uses this information, primarily in biodiversity studies. However the habitat information…

Pathways are integral to systems biology. Their classical representation has proven useful but is inconsistent in the meaning assigned to each arrow (or edge) and inadvertently implies the isolation of one pathway from another. Conversely,…

Live languages continuously evolve to integrate the cultural change of human societies. This evolution manifests through neologisms (new words) or \textbf{semantic changes} of words (new meaning to existing words). Understanding the meaning…

The question whether an ontology can safely be replaced by another, possibly simpler, one is fundamental for many ontology engineering and maintenance tasks. It underpins, for example, ontology versioning, ontology modularization,…

The semantics used for particular terms in an academic field organically evolve over time. Tracking this evolution through inspection of published literature has either been from the perspective of Linguistic scholars or has concentrated…

Measurement of the semantic relatedness or likeness between terms, words, or text data plays an important role in different applications dealing with textual data such as knowledge acquisition, recommender system, and natural language…

Reusing ontologies in practice is still very challenging, especially when multiple ontologies are (jointly) involved. Moreover, despite recent advances, the realization of systematic ontology quality assurance remains a difficult problem.…

Ontology alignment (a.k.a ontology matching (OM)) plays a critical role in knowledge integration. Owing to the success of machine learning in many domains, it has been applied in OM. However, the existing methods, which often adopt ad-hoc…

In recent years ontologies enjoyed a growing popularity outside specialized AI communities. System engineering is no exception to this trend, with ontologies being proposed as a basis for several tasks in complex industrial implements,…

Ontology is the explicit and formal representation of the concepts in a domain and relations among them. Transportation science is a wide domain dealing with mobility over various complex and interconnected transportation systems, such as…

Ontologies have been used for the purpose of bringing system and consistency to subject and knowledge areas. We present a criticism of the present mathematical structure of ontologies and indicate that they are not sufficient in their…

Ontology interoperability is one of the complicated issues that restricts the use of ontologies in knowledge graphs (KGs). Different ontologies with conflicting and overlapping concepts make it difficult to design, develop, and deploy an…

Ontology Matching (OM) plays an important role in many domains such as bioinformatics and the Semantic Web, and its research is becoming increasingly popular, especially with the application of machine learning (ML) techniques. Although the…

The paper surveys the evolution of main algorithmic techniques to compare and search biological sequences. We highlight key algorithmic ideas emerged in response to several interconnected factors: shifts of biological analytical paradigm,…

The importance of improving the FAIRness (findability, accessibility, interoperability, reusability) of research data is undeniable, especially in the face of large, complex datasets currently being produced by omics technologies.…

Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is arguably the next major missing piece in a fully predictive theory of evolution. We refer to this generally as the problem of the genotype-phenotype map.…

This paper studies the role that ontologies can play in establishing conceptual data models during the process of information systems development. A mapping algorithm has been proposed and embedded in a special purpose Transformation-Engine…

Optimization has been becoming a central of studies in mathematic and has many areas with different applications. However, many themes of optimization came from different area have not ties closing to origin concepts. This paper is to…

Ontologies are widely used in materials science to describe experiments, processes, material properties, and experimental and computational workflows. Numerous online platforms are available for accessing and sharing ontologies in Materials…

The electronic marketplace offers great potential for the recommendation of supplies. In the so called recommender systems, it is crucial to apply matchmaking strategies that faithfully satisfy the predicates specified in the demand, and…