Related papers: The forest associated with the record process on a…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
For each integer $k \geq 2$, we introduce a sequence of $k$-ary discrete trees constructed recursively by choosing at each step an edge uniformly among the present edges and grafting on "its middle" $k-1$ new edges. When $k=2$, this…
We study the pruning process developed by Abraham and Delmas (2012) on the discrete Galton-Watson sub-trees of the L\'{e}vy tree which are obtained by considering the minimal sub-tree connecting the root and leaves chosen uniformly at rate…
A major problem for inferring species trees from gene trees is that evolutionary processes can sometimes favour gene tree topologies that conflict with an underlying species tree. In the case of incomplete lineage sorting, this phenomenon…
A new very simple proof of the number of labeled rooted forest-graphs with a given number of vertices is given. As a partial case of this formula we have Cayley's formula.
Random forests are an ensemble method relevant for many problems, such as regression or classification. They are popular due to their good predictive performance (compared to, e.g., decision trees) requiring only minimal tuning of…
Predicting the ancestral sequences of a group of homologous sequences related by a phylogenetic tree has been the subject of many studies, and numerous methods have been proposed to this purpose. Theoretical results are available that show…
We propose and study a multi-scale approach to vector quantization. We develop an algorithm, dubbed reconstruction trees, inspired by decision trees. Here the objective is parsimonious reconstruction of unsupervised data, rather than…
In a rooted tree, we call a vertex {\em balanced} if it is at equal distance from all its descendant leaves. We count balanced vertices in three different tree varieties. For decreasing binary trees, we can prove that the probability that a…
We make two contributions to the Isolation Forest method for anomaly and outlier detection. The first contribution is an information-theoretically motivated generalisation of the score function that is used to aggregate the scores across…
This paper gives a new algorithm for sampling tree-weighted partitions of a large class of planar graphs. Formally, the tree-weighted distribution on $k$-partitions of a graph weights $k$-partitions proportional to the product of the number…
Treewidth is a parameter that measures how tree-like a relational instance is, and whether it can reasonably be decomposed into a tree. Many computation tasks are known to be tractable on databases of small treewidth, but computing the…
Random Forest (RF) is an ensemble classification technique that was developed by Breiman over a decade ago. Compared with other ensemble techniques, it has proved its accuracy and superiority. Many researchers, however, believe that there…
The reconstruction of large phylogenetic trees from data that violates clocklike evolution (or as a supertree constructed from any m input trees) raises a difficult question for biologists - how can one assign relative dates to the vertices…
The $h$-trimming of a tree is a natural regularization procedure which consists in pruning the small branches of a tree: given $h\geq0$, it is obtained by only keeping the vertices having at least one leaf above them at a distance greater…
A gluing of two rooted trees is an identification of their leaves and un-subdivision of the resulting 2-valent vertices. A gluing of two rooted trees is subdivergence free if it has no 2-edge cuts with both roots on the same side of the…
We consider growing random recursive trees in random environment, in which at each step a new vertex is attached (by an edge of a random length) to an existing tree vertex according to a probability distribution that assigns the tree…
It is known that the size of the largest common subtree (i.e., the maximum agreement subtree) of two independent random binary trees with $n$ given labeled leaves is of order between $n^{0.366}$ and $n^{1/2}$. We improve the lower bound to…
We consider large uniform random trees where we fix for each vertex its degree and height. We prove, under natural conditions of convergence for the profile, that those trees properly renormalized converge. To this end, we study the paths…
We study the fundamental question of how likely it is that two randomly chosen trees are isomorphic to each other for different models of random trees. We show that the probability decays exponentially for rooted labeled trees as well as…