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Related papers: On the vibron dressing in the $\alpha$--helicoidal…

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We studied the properties of the intramolecular vibrational excitation (vibron) at finite temperature in a system which consists of two parallel macromolecular chains. It was assumed that vibron interacts exclusively with dispersionless…

Mesoscale and Nanoscale Physics · Physics 2018-02-26 D. Cevizovic , A. Chizhov , A. Reshetnyak , Z. Ivic , S. Galovic

We study the hopping mechanism of the vibron excitation transport in the simple 1D model of biological macromolecular chains. We supposed that the vibron interaction with thermal oscillations of the macromolecular structural elements will…

Mesoscale and Nanoscale Physics · Physics 2014-12-17 D. Čevizović , Z. Ivic. , S. Galović , A. Chizhov A. , A. Reshetnyak

The influence of the intramolecular anharmonicity and the strong vibron-phonon coupling on the two-vibron dynamics in an $\alpha$-helix protein is studied within a modified Davydov model. The intramolecular anharmonicity of each amide-I…

Biological Physics · Physics 2009-11-10 Vincent Pouthier

The properties of the intramolecular vibrational excitation (vibron) in a quasi 1D macromolecular structure are studied. It is supposed that due to the vibron interaction with optical phonon modes, a vibron might form partially dressed…

Mesoscale and Nanoscale Physics · Physics 2018-02-22 D. Cevizovic , A. Chizhov , A. Reshetnyak , Z. Ivic , S. Galovic , S. Petkovic

The vibron dynamics associated to amide-I vibrations in a 3D alpha-helix is described according to a generalized Davydov model. The helix is modeled by three spines of hydrogen-bonded peptide units linked via covalent bonds. To remove the…

Biological Physics · Physics 2009-11-11 Cyril Falvo , Vincent J. C. Pouthier

In the regime of strong coupling between molecular excitons and confined optical modes, the intra-molecular degrees of freedom are profoundly affected, leading to a reduced vibrational dressing of polaritons compared to bare electronically…

Mesoscale and Nanoscale Physics · Physics 2018-10-17 Javier del Pino , Florian A. Y. N. Schröder , Alex W. Chin , Johannes Feist , Francisco J. Garcia-Vidal

We study the hyperfine spectrum of atoms of $^{87}$Rb dressed by a radio-frequency field, and present experimental results in three different situations: freely falling atoms, atoms trapped in an optical dipole trap and atoms in an…

We enlarge our results from the study of the hopping mechanism of the oscillation excitation transport in 1D model of one biology-like macromolecular chain to the case of a system composed from two 1D parallel macromolecular chains with…

Mesoscale and Nanoscale Physics · Physics 2016-01-12 D. Čevizović , S. Petković , S. Galović , A. Chizhov , A. Reshetnyak

Relaxation channels for two-vibron bound states in an anharmonic alpha-helix protein are studied. It is pointed out that the relaxation originates in the interaction between the dressed anharmonic vibrons and the remaining phonons. This…

Biological Physics · Physics 2009-11-10 Vincent J. C. Pouthier , Cyril Falvo

Following the ideas of Davydov's soliton theory, we study the bio-energy transport in protein molecules. By using a quantum Brownian motion model for a phonon dressed vibrational exciton, we calculate the time-dependence on the mean square…

Biological Physics · Physics 2019-04-01 Theja N. De Silva , Peighton Bolt

The two-vibron dynamics associated to amide-I vibrations in a 3D $\alpha$-helix is described according to a generalized Davydov model. The helix is modeled by three spines of hydrogen-bonded peptide units linked via covalent bonds. It is…

Biological Physics · Physics 2009-11-11 Cyril Falvo , Vincent Pouthier

Vibrations in materials and nanostructures at sufficiently high temperatures result in anharmonic atomic displacements, which leads to new phenomena such as thermal expansion and multiphonon scattering processes, with a profound impact on…

We report a comparative Raman spectroscopic study of the quasi-one-dimensional charge-density-wave systems \ab (A = K, Rb). The temperature and polarization dependent experiments reveal charge-coupled vibrational Raman features. The…

Strongly Correlated Electrons · Physics 2009-11-13 D. M. Sagar , D. Fausti , S. Yue , C. A. Kuntscher , S. van Smaalen , P. H. M. van Loosdrecht

We study the temperature dependent dynamical processes of a Si10H16 cluster and obtain a blue shift of the Si-Si vibrational modes with transverse acoustic character and a red shift of the other vibrational modes with increasing…

Materials Science · Physics 2015-06-12 Peng Han , Linas Vilciauskas , Gabriel Bester

The linear perturbation renormalization group is used to study spinless two-band fermion chains at half-filling. The model consists of two species of spinless fermions, namely localized f and extended p, and it takes into account the…

Strongly Correlated Electrons · Physics 2015-06-11 Jozef Sznajd

The phase diagram of a two-dimensional Josephson array of mesoscopic objects is examined. Quantum fluctuations in both the modulus and phase of the superconducting order parameter are taken into account within a lattice boson Hubbard model.…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 A. I. Belousov , S. A. Verzakov , Yu. E. Lozovik

A general theory of electronic excitations in aggregates of molecules coupled to intramolecular vibrations and the harmonic environment is developed for simulation of the third-order nonlinear spectroscopy signals. The model is applied in…

Chemical Physics · Physics 2014-01-17 Vytautas Butkus , Leonas Valkunas , Darius Abramavicius

This study investigates the potential impact of intramolecular excitations on the active regions of biomolecular chains, which may play a role in physiological processes within living cells. We assumed that an excitation localized in a…

Other Condensed Matter · Physics 2025-10-29 Dalibor Chevizovich , Slobodanka Galovic , Vasilije Matic , Zoran Ivic , Zeljko Przulj

We propose a novel approach to calculate dynamical processes at ultrafast time scale in molecules in which vibrational and electronic motions are strongly mixed. The relevant electronic orbitals and their interactions are described by a…

Strongly Correlated Electrons · Physics 2009-11-07 L. Arrachea , A. A. Aligia , G. E. Santoro

The ultrafast dynamics of charge carriers in organic donor-acceptor interfaces are of primary importance to understanding the fundamental properties of these systems. In this work, we focus on a charge-transfer complex formed by…

Materials Science · Physics 2023-10-23 Matheus Jacobs , Jannis Krumland , Ana M. Valencia , Caterina Cocchi
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