Related papers: The complexity of string partitioning
We say that a word $w$ on a totally ordered alphabet avoids the word $v$ if there are no subsequences in $w$ order-equivalent to $v$. In this paper we suggest a new approach to the enumeration of words on at most $k$ letters avoiding a…
Let $S_{T}(k)$ denote the set of distinct substrings of length $k$ in a string $T$, then the $k$-th substring complexity is defined by its cardinality $|S_{T}(k)|$. Recently, $\delta = \max \{ |S_{T}(k)| / k : k \ge 1 \}$ is shown to be a…
Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…
A two-dimensional string is simply a two-dimensional array. We continue the study of the combinatorial properties of repetitions in such strings over the binary alphabet, namely the number of distinct tandems, distinct quartics, and runs.…
We study the complexity of approximating solution structure of the bijective weighted sentence alignment problem of DeNero and Klein (2008). In particular, we consider the complexity of finding an alignment that has a significant overlap…
We show that classical and quantum Kolmogorov complexity of binary strings agree up to an additive constant. Both complexities are defined as the minimal length of any (classical resp. quantum) computer program that outputs the…
We consider the decision problem asking whether a partial rational symmetric matrix with an all-ones diagonal can be completed to a full positive semidefinite matrix of rank at most $k$. We show that this problem is $\NP$-hard for any fixed…
Building an infinite square-free word by appending one letter at a time while simultaneously avoiding the creation of squares is most likely to fail. When the alphabet has two letters this approach is impossible. When the alphabet has three…
We construct $N=2$ super-$W_{n+1}$ strings and obtain the complete physical spectrum, for arbitrary $n \ge 2$. We also derive more general realisations of the super-$W_{n+1}$ algebras in terms of $k$ commuting $N=2$ super energy-momentum…
Unrefinable partitions are a subset of partitions into distinct parts which satisfy an additional unrefinability property. More precisely, being an unrefinable partition means that none of the parts can be written as the sum of smaller…
We develop an FPT algorithm and a bi-kernel for the Weighted Edge Clique Partition (WECP) problem, where a graph with $n$ vertices and integer edge weights is given together with an integer $k$, and the aim is to find $k$ cliques, such that…
A decision problem is called parameterized if its input is a pair of strings. One of these strings is referred to as a parameter. The problem: given a propositional logic program P and a non-negative integer k, decide whether P has a stable…
We introduce the strongly NP-complete pagination problem, an extension of BIN PACKING where packing together two items may make them occupy less volume than the sum of their individual sizes. To achieve this property, an item is defined as…
Given a graph $G$ on $n$ vertices, for which $m$ is it possible to partition the edge set of the $m$-fold complete graph $mK_n$ into copies of $G$? We show that there is an integer $m_0$, which we call the \emph{partition modulus of $G$},…
A quasi-Gray code of dimension $n$ and length $\ell$ over an alphabet $\Sigma$ is a sequence of distinct words $w_1,w_2,\dots,w_\ell$ from $\Sigma^n$ such that any two consecutive words differ in at most $c$ coordinates, for some fixed…
A squarefree word is a sequence $w$ of symbols such that there are no strings $x, y$, and $z$ for which $w=xyyz$. A nonrepetitive coloring of a graph is an edge coloring in which the sequence of colors along any open path is squarefree. We…
Given strings $P$ and $Q$ the (exact) string matching problem is to find all positions of substrings in $Q$ matching $P$. The classical Knuth-Morris-Pratt algorithm [SIAM J. Comput., 1977] solves the string matching problem in linear time…
The Closest String Problem is an NP-hard problem that aims to find a string that has the minimum distance from all sequences that belong to the given set of strings. Its applications can be found in coding theory, computational biology, and…
Indexing of very large collections of strings such as those produced by the widespread sequencing technologies, heavily relies on multi-string generalizations of the Burrows-Wheeler Transform (BWT), and for this problem various in-memory…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…