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A word over an ordered alphabet is said to be clustering if identical letters appear adjacently in its Burrows-Wheeler transform. Such words are strictly related to (discrete) interval exchange transformations. We use an extended version of…

Formal Languages and Automata Theory · Computer Science 2025-04-28 Francesco Dolce , Christian B. Hughes

We investigate various connections between the clustering for the Burrows-Wheeler transform, a lossless algorithm used in data compression, and languages of interval exchange transformations. We show that a primitive word $u$ clusters for a…

Combinatorics · Mathematics 2026-03-18 Sébastien Ferenczi , Luca Q. Zamboni

We characterize the clustering of a word under the Burrows-Wheeler transform in terms of the resolution of a bounded number of bispecial factors belonging to the language generated by all its powers. We use this criterion to compute, in…

Dynamical Systems · Mathematics 2023-05-31 Sébastien Ferenczi , Luca Q. Zamboni

We relate the Burrows-Wheeler transformation with a result in combinatorics on words known as the Gessel-Reutenauer transformation.

Data Structures and Algorithms · Computer Science 2016-08-16 Maxime Crochemore , Jacques Désarménien , Dominique Perrin

Let $W$ be an infinite word over finite alphabet $A$. We get combinatorial criteria of existence of interval exchange transformations that generate the word W.

Dynamical Systems · Mathematics 2017-11-30 A. Ya. Belov , A. L. Chernyat'ev

We describe and experimentally evaluate a method for automatically clustering words according to their distribution in particular syntactic contexts. Deterministic annealing is used to find lowest distortion sets of clusters. As the…

cmp-lg · Computer Science 2008-02-03 Fernando Pereira , Naftali Tishby , Lillian Lee

We formulate and explain the extended Burrows-Wheeler transform of Mantaci et al from the viewpoint of permutations on a chain taken as a union of partial order-preserving mappings. In so doing we establish a link with syntactic semigroups…

Group Theory · Mathematics 2019-01-25 Peter M. Higgins

The recently introduced class of Wheeler graphs, inspired by the Burrows-Wheeler Transform (BWT) of a given string, admits an efficient index data structure for searching for subpaths with a given path label, and lifts the applicability of…

Formal Languages and Automata Theory · Computer Science 2020-02-25 Jarno Alanko , Giovanna D'Agostino , Alberto Policriti , Nicola Prezza

The Burrows-Wheeler Transform is a string transformation that plays a fundamental role for the design of self-indexing compressed data structures. Over the years, researchers have successfully extended this transformation outside the…

Data Structures and Algorithms · Computer Science 2019-02-05 Raffaele Giancarlo , Giovanni Manzini , Giovanna Rosone , Marinella Sciortino

The Burrows-Wheeler transform (BWT) is a reversible transform that converts a string $w$ into another string $\mathsf{BWT}(w)$. The size of the run-length encoded BWT (RLBWT) can be interpreted as a measure of repetitiveness in the class of…

Discrete Mathematics · Computer Science 2024-11-19 Hideo Bannai , Tomohiro I , Yuto Nakashima

The Burrows-Wheeler transform (BWT) is a well studied text transformation widely used in data compression and text indexing. The BWT of two strings can also provide similarity measures between them, based on the observation that the more…

Data Structures and Algorithms · Computer Science 2020-09-10 Felipe A. Louza , Guilherme P. Telles , Simon Gog , Liang Zhao

We study supervised learning problems using clustering constraints to impose structure on either features or samples, seeking to help both prediction and interpretation. The problem of clustering features arises naturally in text…

Machine Learning · Computer Science 2016-09-20 Vincent Roulet , Fajwel Fogel , Alexandre d'Aspremont , Francis Bach

Models of bags of words typically assume topic mixing so that the words in a single bag come from a limited number of topics. We show here that many sets of bag of words exhibit a very different pattern of variation than the patterns that…

Information Retrieval · Computer Science 2012-02-20 Nebojsa Jojic , Alessandro Perina

We prove that for every integer $n > 0$ and for every alphabet $\Sigma_k$ of size $k \geq 3$, there exists a necklace of length $n$ whose Burrows-Wheeler Transform (BWT) is completely unclustered, i.e., it consists of exactly $n$ runs with…

Discrete Mathematics · Computer Science 2025-08-29 Gabriele Fici , Estéban Gabory , Giuseppe Romana , Marinella Sciortino

Transformers play a central role in the inner workings of large language models. We develop a mathematical framework for analyzing Transformers based on their interpretation as interacting particle systems, which reveals that clusters…

Machine Learning · Computer Science 2025-08-22 Borjan Geshkovski , Cyril Letrouit , Yury Polyanskiy , Philippe Rigollet

A vocabulary is a list of words designating subsets from a grand set X. We model a vocabulary as a partition of X and study the aggregation of individual vocabularies into a collective one. We characterize aggregation rules when X is…

Theoretical Economics · Economics 2026-03-16 Marco LiCalzi , M. Alperen Yasar

When coping with literary texts such as novels or short stories, the extraction of structured information in the form of a knowledge graph might be hindered by the huge number of possible relations between the entities corresponding to the…

Computation and Language · Computer Science 2020-11-30 Simone Mellace , K Vani , Alessandro Antonucci

Roughly speaking, clustering evolving networks aims at detecting structurally dense subgroups in networks that evolve over time. This implies that the subgroups we seek for also evolve, which results in many additional tasks compared to…

Social and Information Networks · Computer Science 2014-01-16 Tanja Hartmann , Andrea Kappes , Dorothea Wagner

We present a global optimization algorithm for clustering data given the ratio of likelihoods that each pair of data points is in the same cluster or in different clusters. To define a clustering solution in terms of pairwise relationships,…

Machine Learning · Computer Science 2015-06-11 Vijay Kumar , Dan Levy

Recent techniques for the task of short text clustering often rely on word embeddings as a transfer learning component. This paper shows that sentence vector representations from Transformers in conjunction with different clustering methods…

Computation and Language · Computer Science 2021-02-02 Leonid Pugachev , Mikhail Burtsev
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