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Natural, social, and artificial multi-agent systems usually operate in dynamic environments, where the ability to respond to changing circumstances is a crucial feature. An effective collective response requires suitable information…

Systems and Control · Computer Science 2022-09-29 David Mateo , Nikolaj Horsevad , Vahid Hassani , Mohammadreza Chamanbaz , Roland Bouffanais

A striking feature of our universe is its near criticality. The cosmological constant and weak hierarchy problems, as well as the metastability of the electroweak vacuum, can all be understood as problems of criticality. This suggests a…

High Energy Physics - Theory · Physics 2019-12-11 Justin Khoury , Onkar Parrikar

Maximum entropy models are increasingly being used to describe the collective activity of neural populations with measured mean neural activities and pairwise correlations, but the full space of probability distributions consistent with…

Biological Physics · Physics 2017-08-22 Badr F. Albanna , Christopher Hillar , Jascha Sohl-Dickstein , Michael R. DeWeese

Networks of living neurons exhibit an avalanche mode of activity, experimentally found in organotypic cultures. Moreover, experimental studies of morphology indicate that neurons develop a network of small-world-like connections, with the…

Neurons and Cognition · Quantitative Biology 2007-05-23 G. L. Pellegrini , L. de Arcangelis , H. J. Herrmann , C. Perrone-Capano

Our mysterious brain is believed to operate near a non-equilibrium point and generate critical self-organized avalanches in neuronal activity. Recent experimental evidence has revealed significant heterogeneity in both synaptic input and…

Neurons and Cognition · Quantitative Biology 2018-07-12 Shengdun Wu , Yangsong Zhang , Yan Cui , Heng Li , Jiakang Wang , Lijun Guo , Yang Xia , Dezhong Yao , Peng Xu , Daqing Guo

The design of fluid channel structures of reactors or separators of chemical processes is key to enhancing the mass transfer processes inside the devices. However, the systematic design of channel topological structures is difficult for…

Fluid Dynamics · Physics 2025-03-07 Chenhui Kou , Yuhui Yin , Min Zhu , Shengkun Jia , Yiqing Luo , Xigang Yuana , Lu Lu

We present a mathematical analysis of a networks with Integrate-and-Fire neurons and adaptive conductances. Taking into account the realistic fact that the spike time is only known within some \textit{finite} precision, we propose a model…

Biological Physics · Physics 2010-11-09 B. Cessac , T. Vieville

Biological information processing networks consist of many components, which are coupled by an even larger number of complex multivariate interactions. However, analyses of data sets from fields as diverse as neuroscience, molecular…

Quantitative Methods · Quantitative Biology 2016-03-23 Lina Merchan , Ilya Nemenman

We investigate the efficient transmission and processing of weak, subthreshold signals in a realistic neural medium in the presence of different levels of the underlying noise. Assuming Hebbian weights for maximal synaptic conductances --…

Biological Physics · Physics 2015-08-19 Joaquin J. Torres , Irene Elices , J. Marro

In the light of recent experimental findings that gap junctions are essential for low level intensity detection in the sensory periphery, the Greenberg-Hastings cellular automaton is employed to model the response of a two-dimensional…

Neurons and Cognition · Quantitative Biology 2016-09-08 Mauro Copelli , Osame Kinouchi

Many networks are characterized by highly heterogeneous distributions of links, which are called scale-free networks and the degree distributions follow $p(k)\sim ck^{-\alpha}$. We study the robustness of scale-free networks to random…

Disordered Systems and Neural Networks · Physics 2009-11-11 Bing Wang , Huanwen Tang , Chonghui Guo , Zhilong Xiu

In this paper, we present a detailed framework to analyze the evolution of the random topology of a time-varying wireless network via the information theoretic notion of entropy rate. We consider a propagation channel varying over time with…

Information Theory · Computer Science 2018-11-08 Arta Cika , Mihai-Alin Badiu , Justin P. Coon , Shahriar Etemadi Tajbakhsh

Synchrony is inevitable in many oscillating systems -- from the canonical alignment of two ticking grandfather clocks, to the mutual entrainment of beating flagella or spiking neurons. Yet both biological and manmade systems provide…

Adaptation and Self-Organizing Systems · Physics 2021-06-16 William Gilpin

Cells are often considered input-output devices that maximize the transmission of information by converting extracellular stimuli (input) via signaling pathways (communication channel) to cell behavior (output). However, in biological…

Cell Behavior · Quantitative Biology 2019-11-04 Gabriele Micali , Robert G. Endres

Complex networks are ubiquitous in nature and play a role of paramount importance in many contexts. Internet and the cyberworld, which permeate our everyday life, are self-organized hierarchical graphs. Urban traffic flows on intricate road…

Physics and Society · Physics 2014-08-08 Francesca Di Patti , Duccio Fanelli , Francesco Piazza

In the past few decades, there have been intense debates whether the brain operates at a critical state. To verify the criticality hypothesis in the neuronal networks is challenging and the accumulating experimental and theoretical results…

Neurons and Cognition · Quantitative Biology 2025-02-26 Chia-Ying Lin , Mei Ian Sam , Yi-Ching Tsai , Hsiu-Hau Lin

The maximum entropy principle from statistical mechanics states that a closed system attains an equilibrium distribution that maximizes its entropy. We first show that for graphs with fixed number of edges one can define a stochastic edge…

Disordered Systems and Neural Networks · Physics 2007-05-23 Jesse S. A. Bridgewater , P. Oscar Boykin , Vwani P. Roychowdhury

Maximum entropy modeling is a flexible and popular framework for formulating statistical models given partial knowledge. In this paper, rather than the traditional method of optimizing over the continuous density directly, we learn a smooth…

Methodology · Statistics 2017-05-01 Gabriel Loaiza-Ganem , Yuanjun Gao , John P. Cunningham

The activity in the brain cortex remarkably shows a simultaneous presence of robust collective oscillations and neuronal avalanches, where intermittent bursts of pseudo-synchronous spiking are interspersed with long periods of quiescence.…

Adaptation and Self-Organizing Systems · Physics 2023-08-16 Max Contreras , Everton S. Medeiros , Anna Zakharova , Philipp Hövel , Igor Franović

Several types of biological networks have recently been shown to be accurately described by a maximum entropy model with pairwise interactions, also known as the Ising model. Here we present an approach for finding the optimal mappings…

Biological Physics · Physics 2015-05-14 Jeffrey D. Fitzgerald , Tatyana O. Sharpee