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In this paper we study a two-level branching model for virus populations under cell division. We assume that the cells are carrying virus populations which evolve as a branching particle system with competition, while the cells split…

Probability · Mathematics 2020-12-09 Luis Osorio , Anita Winter

We model the growth of a cell population using a piecewise deterministic Markov branching tree. In this model, each cell splits into two offspring at a division rate $B(x)$, which depends on its size $x$. The size of each cell increases…

Probability · Mathematics 2024-09-06 Nathalie Krell

Mechanisms leading to speciation are a major focus in evolutionary biology. In this paper, we present and study a stochastic model of population where individuals, with type a or A, are equivalent from ecological, demographical and spatial…

Populations and Evolution · Quantitative Biology 2017-04-20 Camille Coron , Manon Costa , Hélène Leman , Charline Smadi

This paper develops a quasispecies model where cells can adopt a two-cell survival strategy. Within this strategy, pairs of cells join together, at which point one of the cells sacrifices its own replicative ability for the sake of the…

Populations and Evolution · Quantitative Biology 2009-11-11 Emmanuel Tannenbaum

Motivated by observations in sequence data of herpesviruses, we introduce a multi-locus model for the joint evolution of different genotypes in a virus population that is distributed across a population of hosts. In the model, virus…

Populations and Evolution · Quantitative Biology 2025-09-24 Raphael Eichhorn , Cornelia Pokalyuk

We study time continuous branching processes with exponentially distributed lifetimes, with two types of cells that proliferate according to binary fission. A range of possible system dynamics are considered, each of which is characterized…

Probability · Mathematics 2022-04-27 Nam H Nguyen , Marek Kimmel

A two-type two-sex branching process is introduced with the aim of describing the interaction of predator and prey populations with sexual reproduction and promiscuous mating. In each generation and in each species the total number of…

Populations and Evolution · Quantitative Biology 2021-01-29 Cristina Gutierrez , Carmen Minuesa

The possibility of coexistence of two competing populations is a classical question which dates back to the earliest `predator-prey' models. In this paper we study this question in the context of a model for the spread of a virus infection…

Probability · Mathematics 2012-10-30 Jakob E. Björnberg , Erik I. Broman

The behavior of two interacting populations, ``hosts''and ``parasites'', is investigated on Cayley trees and scale-free networks. In the former case analytical and numerical arguments elucidate a phase diagram, whose most interesting…

Statistical Mechanics · Physics 2015-06-25 Matti Peltomaki , Ville Vuorinen , Mikko Alava , Martin Rost

A fundamental question in biology is how cell populations evolve into different subtypes based on homogeneous processes at the single cell level. Here we show that population bimodality can emerge even when biological processes are…

Molecular Networks · Quantitative Biology 2019-07-01 Jorge Fernandez-de-Cossio-Diaz , Roberto Mulet , Alexei Vazquez

We present a stochastic approach to modeling the dynamics of coexistence of prey and predator populations. It is assumed that the space of coexistence is explicitly subdivided in a grid of cells. Each cell can be occupied by only one…

Populations and Evolution · Quantitative Biology 2015-06-26 Kelly C. de Carvalho , Tania Tome

The immune response to a pathogen has two basic features. The first is the expansion of a few pathogen-specific cells to form a population large enough to control the pathogen. The second is the process of differentiation of cells from an…

Populations and Evolution · Quantitative Biology 2014-02-04 Sean P Stromberg , Rustom Antia , Ilya Nemenman

In this paper, we introduce a two-sex controlled branching model to describe the interaction between predator and prey populations with sexual reproduction. This process is a two-type branching process, where the first type corresponds to…

Probability · Mathematics 2019-10-31 Cristina Gutierrez , Carmen Minuesa

We present a model for host-parasite dynamics which incorporates both vertical and horizontal transmission as well as spatial structure. Our model consists of stacked contact processes (CP), where the dynamics of the host is a simple CP on…

Biological Physics · Physics 2015-05-26 Steven J. Court , Richard A. Blythe , Rosalind J. Allen

The possible coexistence of one host, one aggressive parasite and one non-lethal parasite is simulated using the Penna model of biological ageing. If the aggressive parasites survive the difficult initial times where they have to adjust…

Populations and Evolution · Quantitative Biology 2008-01-31 Dietrich Stauffer , Karl-Heinz Lampe

This paper deals with the derivation of a collective model of cell populations out of an individual-based description of the underlying physical particle system. By looking at the spatial distribution of cells in terms of time-evolving…

Mathematical Physics · Physics 2014-11-12 Annachiara Colombi , Marco Scianna , Andrea Tosin

Discrete-time models are the traditional approach for capturing population dynamics of a host-parasitoid system. Recent work has introduced a semi-discrete framework for obtaining model update functions that connect host-parasitoid…

Populations and Evolution · Quantitative Biology 2015-03-09 Brooks Emerick , Abhyudai Singh

Stem cells, through their ability to produce daughter stem cells and differentiate into specialized cells, are essential in the growth, maintenance, and repair of biological tissues. Understanding the dynamics of cell populations in the…

Applications · Statistics 2026-02-02 Huyen Nguyen , Haim Bar , Zhiyi Chi , Vladimir Pozdnyakov

In this work we present a general framework for the modeling of the transmission dynamics of macroparasites which do not reproduce within the host like Ascaris lumbricoides, Trichuris trichiura, Necator americanus y Ancylostoma duodenale.…

Populations and Evolution · Quantitative Biology 2022-05-19 Gonzalo Maximiliano Lopez , Juan Pablo Aparicio

Technological parasitism is a new theory to explain the evolution of technology in society. In this context, this study proposes a model to analyze the interaction between a host technology (system) and a parasitic technology (subsystem) to…

General Economics · Economics 2019-01-29 Mario Coccia