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Phylogenomics is a new field which applies to tools in phylogenetics to genome data. Due to a new technology and increasing amount of data, we face new challenges to analyze them over a space of phylogenetic trees. Because a space of…

Combinatorics · Mathematics 2020-05-15 Ruriko Yoshida

Mechanical metamaterials exhibit exotic properties at the system level, that emerge from the interactions of many nearly rigid building blocks. Determining these emergent properties theoretically has remained an open challenge outside of a…

Soft Condensed Matter · Physics 2022-05-26 Yue Zheng , Imtiar Niloy , Paolo Celli , Ian Tobasco , Paul Plucinsky

Given a surface $S$ and a finite group $G$ of automorphisms of $S$, consider the birational maps $S\dashrightarrow S'$ that commute with the action of $G$. This leads to the notion of a $G$-minimal variety. A natural question arises: for a…

Algebraic Geometry · Mathematics 2017-12-06 Dmitrijs Sakovics

In this paper, we introduce the notion of strong geometry, a structure composed by both the chirotope of a set of points X in the d-dimensional space and the wedge chirotope which is the specific adjoint chirotope induced by the hyperplanes…

Combinatorics · Mathematics 2025-11-26 Baptiste Gros , Jorge L. Ramirez Alfonsin

In this work, we answer an open problem in the study of phylogenetic networks. Phylogenetic trees are rooted binary trees in which all edges are directed away from the root, whereas phylogenetic networks are rooted acyclic digraphs. For the…

Populations and Evolution · Quantitative Biology 2015-11-12 Andreas D. M. Gunawan , Bhaskar DasGupta , Louxin Zhang

In this paper, we lay the groundwork on the comparison of phylogenetic networks based on edge contractions and expansions as edit operations, as originally proposed by Robinson and Foulds to compare trees. We prove that these operations…

Data Structures and Algorithms · Computer Science 2025-02-21 Bertrand Marchand , Nadia Tahiri , Olivier Tremblay-Savard , Manuel Lafond

The use of origami in engineering has significantly expanded in recent years, spanning deployable structures across scales, folding robotics, and mechanical metamaterials. However, finding foldable paths can be a formidable task as the…

Soft Condensed Matter · Physics 2024-09-30 Matthew Grasinger , Andrew Gillman , Philip Buskohl

In this paper we studied a broader type of generalized balls which are domains on the complex projective with possibly Levi-degenerate boundaries. We proved rigidity theorems for proper holomorphic mappings among them by exploring the…

Complex Variables · Mathematics 2021-04-14 Sui-Chung Ng , Yuehuan Zhu

Phylogenetic trees summarize evolutionary relationships between organisms, and tools to analyze collections of phylogenetic trees enable contrasts between different genes' ancestry. The BHV metric space has enabled the analysis of…

Quantitative Methods · Quantitative Biology 2026-04-24 Maria Alejandra Valdez Cabrera , Amy D Willis

We study pairs of non-constant maps between two integral schemes of finite type over two (possibly different) fields of positive characteristic. When the target is quasi-affine, Tamagawa showed that the two maps are equal up to a power of…

Algebraic Geometry · Mathematics 2023-10-19 Piotr Achinger , Jakob Stix

We propose an evolutionary mechanism of phyllotaxis, regular arrangement of leaves on a plant stem. It is shown that the phyllotactic pattern with the Fibonacci sequence has a selective advantage, for it involves the least number of…

Biological Physics · Physics 2015-03-17 Takuya Okabe

Kirigami is the art of cutting paper to make it articulated and deployable, allowing for it to be shaped into complex two and three-dimensional geometries. The mechanical response of a kirigami sheet when it is pulled at its ends is enabled…

Differential Geometry · Mathematics 2021-04-20 Qing Han , Marta Lewicka , L. Mahadevan

There is a long tradition of the axiomatic study of consensus methods in phylogenetics that satisfy certain desirable properties. One recently-introduced property is associative stability, which is desirable because it confers a…

Populations and Evolution · Quantitative Biology 2018-10-22 Michael Hendriksen , Andrew Francis

There exist many variants of guarding an orthogonal polygon in an orthogonal fashion: sometimes a guard can see an entire rectangle, or along a staircase, or along an orthogonal path with at most $k$ bends. In this paper, we study all these…

Computational Geometry · Computer Science 2017-06-08 Therese Biedl , Saeed Mehrabi

Dissimilarity measures for (possibly weighted) phylogenetic trees based on the comparison of their vectors of path lengths between pairs of taxa, have been present in the systematics literature since the early seventies. But, as far as…

Populations and Evolution · Quantitative Biology 2008-07-06 Gabriel Cardona , Merce Llabres , Francesc Rossello , Gabriel Valiente

A saddle loop is a germ of a holomorphic foliation near a homoclinic saddle connection. We prove that they are classied by their Poincar{\'e} rst-return map. We also prove that they are formally rigid when the Poincar{\'e} map is…

Dynamical Systems · Mathematics 2025-11-21 Daniel Panazzolo , Maja Resman , Loïc Teyssier

We prove that a map between two realcompact spaces is skeletal if and only if it is homeomorphic to the limit map of a skeletal morphism between w-spectra with surjective limit projections.

General Topology · Mathematics 2012-12-19 Taras Banakh , Andrzej Kucharski , Marta Martynenko

We study the stability of pullback foliations under morphisms and rational maps via Grothendieck's Drapeaux scheme. In the local setting, a foliated version of Schlessinger's Theorem on rigidity of conical singularities was achieved. We…

Algebraic Geometry · Mathematics 2024-12-31 Pablo Perrella

We consider deformations of singular Lagrangian varieties in symplectic spaces. We show the coherence of the direct image sheaves of relative infinitesimal Lagrangian deformations. Using this result, we prove that, under some assumptions, a…

Algebraic Geometry · Mathematics 2007-05-23 Mauricio D. Garay

The presence of cuts in a thin planar sheet can dramatically alter its mechanical and geometrical response to loading, as the cuts allow the sheet to deform strongly in the third dimension. We use numerical experiments to characterize the…

Soft Condensed Matter · Physics 2021-12-28 Gaurav Chaudhary , Lauren Niu , Marta Lewicka , Qing Han , L Mahadevan