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We model a social-encounter network where linked nodes match for reproduction in a manner depending probabilistically on each node`s attractiveness. The developed model reveals that increasing either the network`s mean degree or the…

Physics and Society · Physics 2017-06-22 S. Dipple , T. Jia , T. Caraco , G. Korniss , B. K. Szymanski

Over the last few decades, ecologists have come to appreciate that key ecological patterns, which describe ecological communities at relatively large spatial scales, are not only scale dependent, but also intimately intertwined. The…

Populations and Evolution · Quantitative Biology 2016-09-13 Fabio Peruzzo , Sandro Azaele

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-18 Chengyi Tu , Samir Suweis , Jacopo Grillib , Marco Formentin , Amos Maritan

Empirical observations show that ecological communities can have a huge number of coexisting species, also with few or limited number of resources. These ecosystems are characterized by multiple type of interactions, in particular…

Populations and Evolution · Quantitative Biology 2018-05-21 Chengyi Tu , Samir Suweis , Jacopo Grilli , Marco Formentin , Amos Maritan

Stability is a desirable property of complex ecosystems. If a community of interacting species is at a stable equilibrium point then it is able to withstand small perturbations to component species' abundances without suffering adverse…

Populations and Evolution · Quantitative Biology 2022-09-13 Francesco Caravelli , Phillip Staniczenko

Complex networks are a recent type of frameworks used to study complex systems with many interacting elements, such as Self-Organized Criticality (SOC). The network node's tendency to link to other nodes of similar type is characterized by…

Adaptation and Self-Organizing Systems · Physics 2017-04-14 Alfonso Allen-Perkins , Javier Galeano , Juan Manuel Pastor

Constraints placed upon the phenotypes of organisms result from their interactions with the environment. Over evolutionary timescales, these constraints feed back onto smaller molecular subnetworks comprising the organism. The evolution of…

Molecular Networks · Quantitative Biology 2015-06-10 Cameron Smith , Ximo Pechuan , Raymond S. Puzio , Daniel Biro , Aviv Bergman

Networks are a convenient way to represent many interactions among different entities as they provide an efficient and clear methodology to evaluate and organize relevant data. While there are many features for characterizing networks there…

Populations and Evolution · Quantitative Biology 2023-04-13 Claudia Huaylla , Marcelo N Kuperman , Lucas A. Garibaldi

How diversity is maintained in natural ecosystems is a long-standing question in Theoretical Ecology. By studying a system that combines ecological dynamics, heterogeneous interactions and spatial structure, we uncover a new mechanism for…

Populations and Evolution · Quantitative Biology 2024-03-21 Giulia Garcia Lorenzana , Ada Altieri , Giulio Biroli

Networks describe a range of social, biological and technical phenomena. An important property of a network is its degree correlation or assortativity, describing how nodes in the network associate based on their number of connections.…

Social and Information Networks · Computer Science 2017-02-06 David N Fisher , Matthew J Silk , Daniel W Franks

Biogeographical regions (geographically distinct assemblages of species and communities) constitute a cornerstone for ecology, biogeography, evolution and conservation biology. Species turnover measures are often used to quantify…

Quantitative Methods · Quantitative Biology 2015-08-19 Daril A. Vilhena , Alexandre Antonelli

Competitive exclusion, a key principle of ecology, can be generalized to understand many other complex systems. Individuals under surviving pressure tend to be different from others, and correlations among them change correspondingly to the…

Data Analysis, Statistics and Probability · Physics 2008-02-14 Chen-Ping Zhu , Tao Zhou , Hui-Jie Yang , Shi-Jie Xiong , Zhi-Ming Gu , Da-Ning Shi , Da-Ren He , Bing-Hong Wang

In complex networks the rich nodes are the subset of nodes with high degree. These well connected nodes tend to dominate the organisation of the network's structure. In non-evolving networks, a reference network has been used to detect if…

Physics and Society · Physics 2008-12-16 R. J. Mondragon , S. Zhou

Many complex adaptive systems contain a large diversity of specialized components. The specialization at the level of the microscopic degrees of freedom, and diversity at the level of the system as a whole are phenomena that appear during…

adap-org · Physics 2007-05-23 Vivek S. Borkar , Sanjay Jain , Govindan Rangarajan

The consensus that complexity begets stability in ecosystems was challenged in the seventies, a result recently extended to ecologically-inspired networks. The approaches assume the existence of a feasible equilibrium, i.e. with positive…

Populations and Evolution · Quantitative Biology 2016-12-21 Michael Dougoud , Laura Vinckenbosch , Rudolf Rohr , Louis-Félix Bersier , Christian Mazza

Cooperation is ubiquitous across all levels of biological systems ranging from microbial communities to human societies. It, however, seemingly contradicts the evolutionary theory, since cooperators are exploited by free-riders and thus are…

Populations and Evolution · Quantitative Biology 2019-09-23 Yunming Xiao , Bin Wu

We investigate the problem of speciation and coexistence in simple ecosystems when the competition among individuals is included in the Eigen model for quasi-species. By suggesting an analogy between the competition among strains and the…

Statistical Mechanics · Physics 2008-02-03 Franco Bagnoli , Michele Bezzi

In genetics the Moran model describes the neutral evolution of a bi-allelic gene in a population of haploid individuals subjected to mutations. We show in this paper that this model can be mapped into an influence dynamical process on…

Populations and Evolution · Quantitative Biology 2015-03-17 Marcus A. M. de Aguiar , Yaneer Bar-Yam

Several theoretical frameworks have been proposed to explain observed biodiversity patterns, ranging from the classical niche-based theories, mainly employing a continuous formalism, to neutral theories, based on statistical mechanics of…

Quantitative Methods · Quantitative Biology 2019-11-01 Xue Feng , Sara Bonetti , Amilcare Porporato

Nested structure, which is non-random, controls cooperation dynamics and biodiversity in plant-animal mutualistic networks. This structural pattern has been explained in a static (non-growth) network models. However, evolutionary processes…

Populations and Evolution · Quantitative Biology 2015-03-19 Kazuhiro Takemoto , Masanori Arita
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