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We introduce a data structure for counting pattern occurrences in texts compressed with any run-length context-free grammar. Our structure uses space proportional to the grammar size and counts the occurrences of a pattern of length $m$ in…

Data Structures and Algorithms · Computer Science 2025-01-30 Gonzalo Navarro , Alejandro Pacheco

The rank and select operations over a string of length n from an alphabet of size $\sigma$ have been used widely in the design of succinct data structures. In many applications, the string itself need be maintained dynamically, allowing…

Data Structures and Algorithms · Computer Science 2010-06-25 Meng He , J. Ian Munro

A mode of a multiset $S$ is an element $a \in S$ of maximum multiplicity; that is, $a$ occurs at least as frequently as any other element in $S$. Given a list $A[1:n]$ of $n$ items, we consider the problem of constructing a data structure…

Data Structures and Algorithms · Computer Science 2011-01-24 Stephane Durocher , Jason Morrison

Let $S$ be a string of length $n$. In this paper we introduce the notion of \emph{string attractor}: a subset of the string's positions $[1,n]$ such that every distinct substring of $S$ has an occurrence crossing one of the attractor's…

Data Structures and Algorithms · Computer Science 2017-09-20 Nicola Prezza

Given two strings $S$ and $P$, the Episode Matching problem is to find the shortest substring of $S$ that contains $P$ as a subsequence. The best known upper bound for this problem is $\tilde O(nm)$ by Das et al. (1997) , where $n,m$ are…

Data Structures and Algorithms · Computer Science 2024-02-15 Philip Bille , Inge Li Gørtz , Shay Mozes , Teresa Anna Steiner , Oren Weimann

The string indexing problem is a fundamental computational problem with numerous applications, including information retrieval and bioinformatics. It aims to efficiently solve the pattern matching problem: given a text T of length n for…

Data Structures and Algorithms · Computer Science 2025-09-03 Waseem Akram , Takuya Mieno

For any $\epsilon \in (0,1)$, a $(1+\epsilon)$-approximate range mode query asks for the position of an element whose frequency in the query range is at most a factor $(1+\epsilon)$ smaller than the true mode. For this problem, we design an…

Data Structures and Algorithms · Computer Science 2019-07-22 Hicham El-Zein , Meng He , J. Ian Munro , Yakov Nekrich , Bryce Sandlund

A key principle in string processing is local consistency: using short contexts to handle matching fragments of a string consistently. String synchronizing sets [Kempa, Kociumaka; STOC 2019] are an influential instantiation of this…

Data Structures and Algorithms · Computer Science 2026-02-13 Jonas Ellert , Tomasz Kociumaka

The Gap-Hamming-Distance problem arose in the context of proving space lower bounds for a number of key problems in the data stream model. In this problem, Alice and Bob have to decide whether the Hamming distance between their $n$-bit…

Computational Complexity · Computer Science 2009-02-17 Joshua Brody , Amit Chakrabarti

We present a simple and provably optimal non-adaptive cell probe data structure for the static dictionary problem. Our data structure supports storing a set of n key-value pairs from [u]x[u] using s words of space and answering key lookup…

Data Structures and Algorithms · Computer Science 2024-04-22 Kasper Green Larsen , Rasmus Pagh , Giuseppe Persiano , Toniann Pitassi , Kevin Yeo , Or Zamir

We prove an $\Omega(d \lg n/ (\lg\lg n)^2)$ lower bound on the dynamic cell-probe complexity of statistically $\mathit{oblivious}$ approximate-near-neighbor search ($\mathsf{ANN}$) over the $d$-dimensional Hamming cube. For the natural…

Data Structures and Algorithms · Computer Science 2019-04-11 Kasper Green Larsen , Tal Malkin , Omri Weinstein , Kevin Yeo

We study the following substring suffix selection problem: given a substring of a string T of length n, compute its k-th lexicographically smallest suffix. This a natural generalization of the well-known question of computing the maximal…

Data Structures and Algorithms · Computer Science 2013-09-24 Maxim Babenko , Paweł Gawrychowski , Tomasz Kociumaka , Tatiana Starikovskaya

For a text given in advance, the substring minimal suffix queries ask to determine the lexicographically minimal non-empty suffix of a substring specified by the location of its occurrence in the text. We develop a data structure answering…

Data Structures and Algorithms · Computer Science 2016-02-01 Tomasz Kociumaka

Word Break is a prototypical factorization problem in string processing: Given a word $w$ of length $N$ and a dictionary $\mathcal{D} = \{d_1, d_2, \ldots, d_{K}\}$ of $K$ strings, determine whether we can partition $w$ into words from…

Data Structures and Algorithms · Computer Science 2025-06-19 Rajat De , Dominik Kempa

We consider the problem of decompressing the Lempel--Ziv 77 representation of a string $S$ of length $n$ using a working space as close as possible to the size $z$ of the input. The folklore solution for the problem runs in $O(n)$ time but…

Data Structures and Algorithms · Computer Science 2019-11-05 Philip Bille , Mikko Berggren Ettienne , Travis Gagie , Inge Li Gørtz , Nicola Prezza

It was recently proved that any SLP generating a given string $w$ can be transformed in linear time into an equivalent balanced SLP of the same asymptotic size. We show that this result also holds for RLSLPs, which are SLPs extended with…

Data Structures and Algorithms · Computer Science 2022-06-28 Gonzalo Navarro , Francisco Olivares , Cristian Urbina

We consider the $(1+\epsilon)$-approximate nearest neighbor search problem: given a set $X$ of $n$ points in a $d$-dimensional space, build a data structure that, given any query point $y$, finds a point $x \in X$ whose distance to $y$ is…

Data Structures and Algorithms · Computer Science 2018-07-03 Piotr Indyk , Tal Wagner

Can we analyze data without decompressing it? As our data keeps growing, understanding the time complexity of problems on compressed inputs, rather than in convenient uncompressed forms, becomes more and more relevant. Suppose we are given…

Computational Complexity · Computer Science 2018-03-05 Amir Abboud , Arturs Backurs , Karl Bringmann , Marvin Künnemann

The problem of finding a center string that is `close' to every given string arises and has many applications in computational biology and coding theory. This problem has two versions: the Closest String problem and the Closest Substring…

Computational Engineering, Finance, and Science · Computer Science 2007-05-23 Ming Li , Bin Ma , Lusheng Wang

Let $A$ be a static array storing $n$ elements from a totally ordered set. We present a data structure of optimal size at most $n\log_2(3+2\sqrt{2})+o(n)$ bits that allows us to answer the following queries on $A$ in constant time, without…

Data Structures and Algorithms · Computer Science 2011-02-03 Johannes Fischer
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