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Decoding approaches are widely used in neuroscience and machine learning to compare stimulus representations across neural systems, such as different brain regions, organisms, and deep learning models. Popular methods include decoding…

Neurons and Cognition · Quantitative Biology 2026-05-08 Johannes Bertram , Luciano Dyballa , T. Anderson Keller , Savik Kinger , Steven W. Zucker

The brain's spatial orientation system uses different neuron ensembles to aid in environment-based navigation. Two of the ways brains encode spatial information is through head direction cells and grid cells. Brains use head direction cells…

Neural and Evolutionary Computing · Computer Science 2023-09-07 Edward C. Mitchell , Brittany Story , David Boothe , Piotr J. Franaszczuk , Vasileios Maroulas

Achieving fast and reliable temporal signal encoding is crucial for low-power, always-on systems. While current spike-based encoding algorithms rely on complex networks or precise timing references, simple and robust encoding models can be…

Neural and Evolutionary Computing · Computer Science 2025-04-23 Filippo Costa , Chiara De Luca

Understanding how stimuli and synaptic connectivity in uence the statistics of spike patterns in neural networks is a central question in computational neuroscience. Maximum Entropy approach has been successfully used to characterize the…

Biological Physics · Physics 2016-11-26 Rodrigo Cofre , Bruno Cessac

Knowledge graphs are an expressive and widely used data structure due to their ability to integrate data from different domains in a sensible and machine-readable way. Thus, they can be used to model a variety of systems such as molecules…

Neural and Evolutionary Computing · Computer Science 2023-08-28 Dominik Dold , Josep Soler Garrido , Victor Caceres Chian , Marcel Hildebrandt , Thomas Runkler

The response of a neural cell to an external stimulus can follow one of the two patterns: Nonresonant neurons monotonously relax to the resting state after excitation while resonant ones show subthreshold oscillations. We investigate how do…

Neurons and Cognition · Quantitative Biology 2009-11-10 T. Verechtchaguina , L. Schimansky-Geier , I. M. Sokolov

Background: It is commonly assumed in neuronal coding that repeated presentations of a stimulus to a coding neuron elicit similar responses. One common way to assess similarity are spike train distances. These can be divided into…

Neurons and Cognition · Quantitative Biology 2018-02-22 Eero Satuvuori , Thomas Kreuz

Incoming sound is in cochlea and auditory nerve encoded into spike trains. At the third neuron of the auditory pathway, spike trains of the left and right sides are processed in brainstem nuclei to yield sound localization information. Two…

Neurons and Cognition · Quantitative Biology 2020-07-02 Petr Marsalek , Pavel Sanda , Zbynek Bures

The sensory-triggered activity of a neuron is typically characterized in terms of a tuning curve, which describes the neuron's average response as a function of a parameter that characterizes a physical stimulus. What determines the shapes…

Neurons and Cognition · Quantitative Biology 2007-05-23 Emilio Salinas

We would like to know whether the statistics of neuronal responses vary across cortical areas. We examined stimulus-elicited spike count response distributions in V1 and IT cortices of awake monkeys. In both areas the distribution of spike…

Neurons and Cognition · Quantitative Biology 2007-05-23 Ethan D. Gershon , Matthew C. Wiener , Peter E. Latham , Barry J. Richmond

There is extensive evidence that biological neural networks encode information in the precise timing of the spikes generated and transmitted by neurons, which offers several advantages over rate-based codes. Here we adopt a vector space…

Neurons and Cognition · Quantitative Biology 2019-07-16 Dorian Florescu , Daniel Coca

A neuron transforms its input into output spikes, and this transformation is the basic unit of computation in the nervous system. The spiking response of the neuron to a complex, time-varying input can be predicted from the detailed…

Neurons and Cognition · Quantitative Biology 2011-12-19 Michael Famulare , Adrienne Fairhall

Can artificial intelligence unlock the secrets of the human brain? How do the inner mechanisms of deep learning models relate to our neural circuits? Is it possible to enhance AI by tapping into the power of brain recordings? These…

Neurons and Cognition · Quantitative Biology 2024-12-31 Subba Reddy Oota , Zijiao Chen , Manish Gupta , Raju S. Bapi , Gael Jobard , Frederic Alexandre , Xavier Hinaut

In this article, we review a class of neuro-mimetic computational models that we place under the label of spiking predictive coding. Specifically, we review the general framework of predictive processing in the context of neurons that emit…

Neurons and Cognition · Quantitative Biology 2024-09-10 Antony W. N'dri , William Gebhardt , Céline Teulière , Fleur Zeldenrust , Rajesh P. N. Rao , Jochen Triesch , Alexander Ororbia

Neural noise sets a limit to information transmission in sensory systems. In several areas, the spiking response (to a repeated stimulus) has shown a higher degree of regularity than predicted by a Poisson process. However, a simple model…

Neurons and Cognition · Quantitative Biology 2018-01-08 Ulisse Ferrari , Stephane Deny , Olivier Marre , Thierry Mora

To compensate for sensory processing delays, the visual system must make predictions to ensure timely and appropriate behaviors. Recent work has found predictive information about the stimulus in neural populations early in vision…

Neurons and Cognition · Quantitative Biology 2018-10-05 Audrey J. Sederberg , Jason N. MacLean , Stephanie E. Palmer

Frequency discrimination is a fundamental task of the auditory system. The mammalian inner ear, or cochlea, provides a place code in which different frequencies are detected at different spatial locations. However, a temporal code based on…

Neurons and Cognition · Quantitative Biology 2015-06-05 Tobias Reichenbach , A. J. Hudspeth

Correlations in spike-train ensembles can seriously impair the encoding of information by their spatio-temporal structure. An inevitable source of correlation in finite neural networks is common presynaptic input to pairs of neurons. Recent…

Neurons and Cognition · Quantitative Biology 2015-06-04 Tom Tetzlaff , Moritz Helias , Gaute T. Einevoll , Markus Diesmann

Extensive literature has drawn comparisons between recordings of biological neurons in the brain and deep neural networks. This comparative analysis aims to advance and interpret deep neural networks and enhance our understanding of…

Computer Vision and Pattern Recognition · Computer Science 2024-12-10 Mai Gamal , Mohamed Rashad , Eman Ehab , Seif Eldawlatly , Mennatullah Siam

Following a stimulus, the neural response typically strongly varies in time and across neurons before settling to a steady-state. While classical population coding theory disregards the temporal dimension, recent works have argued that…

Neurons and Cognition · Quantitative Biology 2019-07-05 Giulio Bondanelli , Srdjan Ostojic