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The stationary distribution of a sample taken from a Wright-Fisher diffusion with general small mutation rates is found using a coalescent approach. The approximation is equivalent to having at most one mutation in the coalescent tree to…

Populations and Evolution · Quantitative Biology 2018-10-31 Conrad J. Burden , Robert C. Griffiths

Populations of heterogeneous cells play an important role in many biological systems. In this paper we consider systems where each cell can be modelled by an ordinary differential equation. To account for heterogeneity, parameter values are…

Quantitative Methods · Quantitative Biology 2009-09-27 Steffen Waldherr , Jan Hasenauer , Frank Allgöwer

Organisms adapt to fluctuating environments by regulating their dynamics, and by adjusting their phenotypes to environmental changes. We model population growth using multitype branching processes in random environments, where the offspring…

Probability · Mathematics 2009-12-08 Clément Dombry , Christian Mazza , Vincent Bansaye

In tropical regions, fires propagate readily in grasslands but typically consume only edges of forest patches. Thus forest patches grow due to tree propagation and shrink by fires in surrounding grasslands. The interplay between these…

Populations and Evolution · Quantitative Biology 2018-02-15 Laurent Hébert-Dufresne , Adam F. A. Pellegrini , Uttam Bhat , Sidney Redner , Stephen W. Pacala , Andrew M. Berdahl

We study a class of branching processes in which the offspring distribution is not specified directly but is induced by a cycle of internal colony growth, catastrophic reduction and structured dispersal. The parameters governing growth,…

Probability · Mathematics 2026-05-07 Lucas R. de Lima , Fábio P. Machado

Mixed-species growth models are needed as a synthesis of ecological knowledge and for guiding forest management. Individual-tree models have been commonly used, but the difficulties of reliably scaling from the individual to the stand level…

Quantitative Methods · Quantitative Biology 2016-11-08 Oscar García

The planted bisection model is a random graph model in which the nodes are divided into two equal-sized communities and then edges are added randomly in a way that depends on the community membership. We establish necessary and sufficient…

Probability · Mathematics 2020-07-14 Elchanan Mossel , Joe Neeman , Allan Sly

We study cascades under the threshold model on sparse random graphs with community structure. In this model, individuals adopt the new behavior based on how many neighbors have already chosen it. Specifically, we consider the permanent…

Probability · Mathematics 2022-05-05 Mehrdad Moharrami , Vijay Subramanian , Mingyan Liu , Marc Lelarge

We introduce a broad class of spatial models to describe how spatially heterogeneous populations live, die, and reproduce. Individuals are represented by points of a point measure, whose birth and death rates can depend both on spatial…

Probability · Mathematics 2024-01-02 Alison M. Etheridge , Thomas G. Kurtz , Ian Letter , Peter L. Ralph , Terence Tsui Ho Lung

Networks having the geometry and the connectivity of trees are considered as the spatial support of spatiotemporal dynamical processes. A tree is characterized by two parameters: its ramification and its depth. The local dynamics at the…

Pattern Formation and Solitons · Physics 2009-11-07 M. G. Cosenza , K. Tucci

For taxonomic levels higher than species, the abundance distributions of number of subtaxa per taxon tend to approximate power laws, but often show strong deviationns from such a law. Previously, these deviations were attributed to…

Biological Physics · Physics 2009-11-06 Johan Chu , Chris Adami

Dynamic regression trees are an attractive option for automatic regression and classification with complicated response surfaces in on-line application settings. We create a sequential tree model whose state changes in time with the…

Methodology · Statistics 2010-11-23 Matthew A. Taddy , Robert B. Gramacy , Nicholas G. Polson

A simplified model for the growth of a population is studied in which random effects arise because reproducing individuals have a certain probability of surviving until the next breeding season and hence contributing to the next generation.…

Populations and Evolution · Quantitative Biology 2016-04-05 Henry C. Tuckwell

Palm oil production has been identified as one of the major drivers of deforestation for tropical countries. To meet supply chain objectives, commodity producers and other stakeholders need timely information of land cover dynamics in their…

This paper is devoted to a nonlocal dispersal logistic model with seasonal succession in one-dimensional bounded habitat, where the seasonal succession accounts for the effect of two different seasons. Firstly, we provide the…

Analysis of PDEs · Mathematics 2022-12-08 Zhenzhen Li , Binxiang Dai

In many models of genotypic evolution, the vector of genotype populations satisfies a system of linear ordinary differential equations. This system of equations models a competition between differential replication rates (fitness) and…

Populations and Evolution · Quantitative Biology 2009-11-13 Charles L. Epstein

An analytical approximation is derived for the Zero Sum Multinomial distribution which gives the Species Abundance Distribution in Neutral Community Models. The obtained distribution function describes well computer simulation results on…

Populations and Evolution · Quantitative Biology 2007-05-23 Z. Neda , M. Ravasz

The soil seed bank is a major component of plant communities. However, long-term analyses of the dynamics of the seed bank and the ensuing vegetation are rare. Here, we studied the dynamics in plant communities with high dominance of…

Populations and Evolution · Quantitative Biology 2023-01-31 Niv DeMalach , Jaime Kigel , Marcelo Sternberg

We consider two versions of stochastic population models with mutation and selection. The first approach relies on a multitype branching process; here, individuals reproduce and change type (i.e., mutate) independently of each other,…

Populations and Evolution · Quantitative Biology 2009-02-19 E. Baake , R. Bialowons

We propose a framework for studying predictability of extreme events in complex systems. Major conceptual elements -- hierarchical structure, spatial dynamics, and external driving -- are combined in a classical branching diffusion with…

Geophysics · Physics 2010-03-02 Andrei Gabrielov , Vladimir Keilis-Borok , Sayaka Olsen , Ilya Zaliapin
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