Related papers: An efficient algorithm for the diameter of Cayley …
We define a special case of tree decompositions for planar graphs that respect a given embedding of the graph. We study the analogous width of the resulting decomposition we call the embedded-width of a plane graph. We show both upper…
Square grids play a pivotal role in Robertson and Seymour's work on graph minors as planar obstructions to small treewidth. We introduce a three-sided bramble in a plane graph called a net, which generalizes the standard bramble of crosses…
Phylogenetic networks are directed acyclic graphs that depict the genomic evolution of related taxa. Reticulation nodes in such networks (nodes with more than one parent) represent reticulate evolutionary events, such as recombination,…
The kernel method is a potential approach to analyzing structured data such as sequences, trees, and graphs; however, unordered trees have not been investigated extensively. Kimura et al. (2011) proposed a kernel function for unordered…
The {\sc Directed Maximum Leaf Out-Branching} problem is to find an out-branching (i.e. a rooted oriented spanning tree) in a given digraph with the maximum number of leaves. In this paper, we improve known parameterized algorithms and…
A sorting network is a geodesic path from $12 \cdots n$ to $n \cdots 21$ in the Cayley graph of $S_n$ generated by adjacent transpositions. For a uniformly random sorting network, we establish the existence of a local limit of the process…
The diameter of an undirected or a directed graph is defined to be the maximum shortest path distance over all pairs of vertices in the graph. Given an undirected graph $G$, we examine the problem of assigning directions to each edge of $G$…
The problem of realizing finite metric spaces in terms of weighted graphs has many applications. For example, the mathematical and computational properties of metrics that can be realized by trees have been well-studied and such research…
We consider the indirect covering subtree problem (Kim et al., 1996). The input is an edge weighted tree graph along with customers located at the nodes. Each customer is associated with a radius and a penalty. The goal is to locate a…
MAP is the problem of finding a most probable instantiation of a set of variables in a Bayesian network given some evidence. Unlike computing posterior probabilities, or MPE (a special case of MAP), the time and space complexity of…
Token ring topology has been frequently used in the design of distributed loop computer networks and one measure of its performance is the diameter. We propose an algorithm for constructing hamiltonian graphs with $n$ vertices and maximum…
Let $s(n)$ be the minimum number of edges in a graph that contains every $n$-vertex tree as a subgraph. Chung and Graham [J. London Math. Soc. 1983] claim to prove that $s(n)\leqslant O(n\log n)$. We point out a mistake in their proof. The…
We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…
Let $G$ be an undirected graph. We say that $G$ contains a ladder of length $k$ if the $2 \times (k+1)$ grid graph is an induced subgraph of $G$ that is only connected to the rest of $G$ via its four cornerpoints. We prove that if all the…
Measuring the complexity of tree structures can be beneficial in areas that use tree data structures for storage, communication, and processing purposes. This complexity can then be used to compress tree data structures to their…
Computing a minimum-area planar straight-line drawing of a graph is known to be NP-hard for planar graphs, even when restricted to outerplanar graphs. However, the complexity question is open for trees. Only a few hardness results are known…
In the PATH COVER problem, one asks to cover the vertices of a graph using the smallest possible number of (not necessarily disjoint) paths. While the variant where the paths need to be pairwise vertex-disjoint, which we call PATH…
We investigate parameterized algorithms for computing the average-tree phylogenetic diversity (APD) in rooted phylogenetic networks, studying the problem under different structural parameters that capture the deviation of a network from a…
The undirected degree/diameter and degree/girth problems and their directed analogues have been studied for many decades in the search for efficient network topologies. Recently such questions have received much attention in the setting of…
The largest order $n(d,k)$ of a graph of maximum degree $d$ and diameter $k$ cannot exceed the Moore bound, which has the form $M(d,k)=d^k - O(d^{k-1})$ for $d\to\infty$ and any fixed $k$. Known results in finite geometries on generalised…