English
Related papers

Related papers: Forward and Adjoint Sensitivity Computation of Cha…

200 papers

We consider the important problem of estimating parameter sensitivities for stochastic models of reaction networks that describe the dynamics as a continuous-time Markov process over a discrete lattice. These sensitivity values are useful…

Probability · Mathematics 2018-01-12 Ankit Gupta , Muruhan Rathinam , Mustafa Khammash

This work aims to introduce a heuristic timestep-adaptive algorithm for Computational Fluid Dynamics (CFD) and Fluid-Structure Interaction (FSI) problems where the flow is dominated by the pressure. In such scenarios, many time-adaptive…

Numerical Analysis · Mathematics 2024-07-02 Ivan Prusak , Davide Torlo , Monica Nonino , Gianluigi Rozza

A common problem in time series analysis is to predict dynamics with only scalar or partial observations of the underlying dynamical system. For data on a smooth compact manifold, Takens theorem proves a time delayed embedding of the…

Machine Learning · Computer Science 2023-04-12 Charles D. Young , Michael D. Graham

Many physical systems are described by nonlinear differential equations that are too complicated to solve in full. A natural way to proceed is to divide the variables into those that are of direct interest and those that are not, formulate…

Numerical Analysis · Mathematics 2015-11-24 Alexandre J. Chorin , Fei Lu

Motivation: Models of discrete concurrent systems often lead to huge and complex state transition graphs that represent their dynamics. This makes difficult to analyse dynamical properties. In particular, for logical models of biological…

Discrete Mathematics · Computer Science 2014-11-14 Nuno D. Mendes , Pedro T. Monteiro , Jorge Carneiro , Elisabeth Remy , Claudine Chaouiya

Generating long-term trajectories of dissipative chaotic systems autoregressively is a highly challenging task. The inherent positive Lyapunov exponents amplify prediction errors over time. Many chaotic systems possess a crucial property -…

Chaotic Dynamics · Physics 2025-05-27 Yi He , Yiming Yang , Xiaoyuan Cheng , Hai Wang , Xiao Xue , Boli Chen , Yukun Hu

We present an adjoint sensitivity method for hybrid discrete -- continuous systems, extending previously published forward sensitivity methods. We treat ordinary differential equations and differential-algebraic equations of index up to two…

Optimization and Control · Mathematics 2019-04-19 Radu Serban , Antonio Recuero

To infer the parameters of mechanistic models with intractable likelihoods, techniques such as approximate Bayesian computation (ABC) are increasingly being adopted. One of the main disadvantages of ABC in practical situations, however, is…

Computation · Statistics 2018-08-03 Jonathan U Harrison , Ruth E Baker

This paper proposes a new pathwise sensitivity estimator for chaotic SDEs. By introducing a spring term between the original and perturbated SDEs, we derive a new estimator by importance sampling. The variance of the new estimator increases…

Numerical Analysis · Mathematics 2023-01-10 Wei Fang , Mike Giles

This work proposes an innovative approach using machine learning to predict extreme events in time series of chaotic dynamical systems. The research focuses on the time series of the H\'enon map, a two-dimensional model known for its…

Chaotic Dynamics · Physics 2025-07-11 Alexandre C. Andreani , Bruno R. R. Boaretto , Elbert E. N. Macau

Verification, validation and uncertainty quantification (VVUQ) have become a common practice in thermal-hydraulics analysis. An important step in the uncertainty analysis is the sensitivity analysis of various uncertain input parameters.…

Computational Physics · Physics 2018-05-04 Guojun Hu , Tomasz Kozlowski

In this paper, we demonstrate, first in literature known to us, that potential functions can be constructed in continuous dissipative chaotic systems and can be used to reveal their dynamical properties. To attain this aim, a Lorenz-like…

Chaotic Dynamics · Physics 2012-08-09 Yian Ma , Qijun Tan , Ruoshi Yuan , Bo Yuan , Ping Ao

Due to their conjugate posteriors, Gaussian process priors are attractive for estimating the drift of stochastic differential equations with continuous time observations. However, their performance strongly depends on the choice of the…

Statistics Theory · Mathematics 2020-02-04 Jan van Waaij

The invariants of an attractor have been the most used resource to characterize a nonlinear dynamics. Their estimation is a challenging endeavor in short-time series and/or in presence of noise. In this article we present two new…

Chaotic Dynamics · Physics 2017-12-13 Juan F. Restrepo , Gastón Schlotthauer

In this paper, a two-step strategy for parametric sensitivity analysis for such systems is proposed, exploiting advantages and synergies between two recently proposed sensitivity analysis methodologies for stochastic dynamics. The first…

Molecular Networks · Quantitative Biology 2016-02-17 Georgios Arampatzis , Markos A. Katsoulakis , Yannis Pantazis

Modern time series forecasting methods, such as Transformer and its variants, have shown strong ability in sequential data modeling. To achieve high performance, they usually rely on redundant or unexplainable structures to model complex…

Machine Learning · Computer Science 2023-11-30 Jingyi Hou , Zhen Dong , Jiayu Zhou , Zhijie Liu

A system of coupled oscillators on an arbitrary graph is locally driven by the tendency to mutual synchronization between nearby oscillators, but can and often exhibit nonlinear behavior on the whole graph. Understanding such nonlinear…

Dynamical Systems · Mathematics 2023-11-28 Agam Goyal , Zhaoxing Wu , Richard P. Yim , Binhao Chen , Zihong Xu , Hanbaek Lyu

An approach to inference for relative sparsity was developed in prior work, and an adaptive lasso asymptotic normality theorem was given there, but this theorem was not fully used when estimating the variance of the policy coefficients.…

Methodology · Statistics 2026-05-05 Samuel Julian Weisenthal

This study introduces a modified quadratic Lorenz attractor. The properties of this new chaotic system are analysed and discussed in detail, by determining the equilibria points, the eigenvalues of the Jacobian, and the Lyapunov exponents.…

Dynamical Systems · Mathematics 2015-08-28 Buğçe Eminağa , Hatice Aktöre , Mustafa Riza

Estimating the parameters of ordinary differential equations (ODEs) is of fundamental importance in many scientific applications. While ODEs are typically approximated with deterministic algorithms, new research on probabilistic solvers…

Machine Learning · Statistics 2023-12-08 Mohan Wu , Martin Lysy