Related papers: Speeding-up $q$-gram mining on grammar-based compr…
We present Quip, a lossless compression algorithm for next-generation sequencing data in the FASTQ and SAM/BAM formats. In addition to implementing reference-based compression, we have developed, to our knowledge, the first assembly-based…
We present a quantum algorithm for sampling random spanning trees from a weighted graph in $\widetilde{O}(\sqrt{mn})$ time, where $n$ and $m$ denote the number of vertices and edges, respectively. Our algorithm has sublinear runtime for…
The longest square subsequence (LSS) problem consists of computing a longest subsequence of a given string $S$ that is a square, i.e., a longest subsequence of form $XX$ appearing in $S$. It is known that an LSS of a string $S$ of length…
Statistical query (SQ) algorithms are algorithms that have access to an {\em SQ oracle} for the input distribution $D$ instead of i.i.d.~ samples from $D$. Given a query function $\phi:X \rightarrow [-1,1]$, the oracle returns an estimate…
In this work, we describe a full-stack pipeline for natural language processing on near-term quantum computers, aka QNLP. The language-modelling framework we employ is that of compositional distributional semantics (DisCoCat), which extends…
Let us consider the Multiple String Matching Problem. In this problem, we consider a long string, denoted by $t$, of length $n$. This string is referred to as a text. We also consider a sequence of $m$ strings, denoted by $S$, which we…
This paper deals with the two fundamental problems concerning the handling of large n-gram language models: indexing, that is compressing the n-gram strings and associated satellite data without compromising their retrieval speed; and…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
The noisy binary linear problem (NBLP) is known as a computationally hard problem, and therefore, it offers primitives for post-quantum cryptography. An efficient quantum NBLP algorithm that exhibits a polynomial quantum sample and time…
A Straight-Line Program (SLP) for a string $T$ is a context-free grammar in Chomsky normal form that derives $T$ only, which can be seen as a compressed form of $T$. Kida et al.\ introduced collage systems [Theor. Comput. Sci., 2003] to…
We present two new algorithms for the computation of the q-integer linear decomposition of a multivariate polynomial. Such a decomposition is essential for the treatment of q-hypergeometric symbolic summation via creative telescoping and…
Quantization is the key method for reducing inference latency, power and memory footprint of generative AI models. However, accuracy often degrades sharply when activations are quantized below eight bits. Recent work suggests that…
Quantum Natural Language Processing (QNLP) deals with the design and implementation of NLP models intended to be run on quantum hardware. In this paper, we present results on the first NLP experiments conducted on Noisy Intermediate-Scale…
The circuit-level implementation of a quantum string-matching algorithm, which matches a search string (pattern) of length $M$ inside a longer text of length $N$, has already been demonstrated in the literature to outperform its classical…
We study quantum algorithms for several fundamental string problems, including Longest Common Substring, Lexicographically Minimal String Rotation, and Longest Square Substring. These problems have been widely studied in the stringology…
Grammar based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. In this paper, we present a novel…
In this paper, we propose two new interpolation algorithms for sparse multivariate polynomials represented by a straight-line program(SLP). Both of our algorithms work over any finite fields $F_q$ with large characteristic. The first one is…
Given a set of pattern strings $\mathcal{P}=\{P_1, P_2,\ldots P_k\}$ and a text string $S$, the classic dictionary matching problem is to report all occurrences of each pattern in $S$. We study the dictionary problem in the compressed…
We present a new on-line algorithm for computing the Lempel-Ziv factorization of a string that runs in $O(N\log N)$ time and uses only $O(N\log\sigma)$ bits of working space, where $N$ is the length of the string and $\sigma$ is the size of…
The emergence of noisy medium-scale quantum devices has led to proof-of-concept applications for quantum computing in various domains. Examples include Natural Language Processing (NLP) where sentence classification experiments have been…