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Neuroengineering is faced with unique challenges in repairing or replacing complex neural systems that are composed of many interacting parts. These interactions form intricate patterns over large spatiotemporal scales, and produce emergent…

Neurons and Cognition · Quantitative Biology 2016-12-26 Danielle S. Bassett , Ankit N. Khambhati , Scott T. Grafton

We review a recent trend in computational systems biology which aims at using pattern recognition algorithms to infer the structure of large-scale biological networks from heterogeneous genomic data. We present several strategies that have…

Quantitative Methods · Quantitative Biology 2008-09-22 Jean-Philippe Vert

We introduce a graph-theoretic vertex dissolution model that applies to a number of redistribution scenarios such as gerrymandering in political districting or work balancing in an online situation. The central aspect of our model is the…

Discrete Mathematics · Computer Science 2016-01-12 René van Bevern , Robert Bredereck , Jiehua Chen , Vincent Froese , Rolf Niedermeier , Gerhard J. Woeginger

What networks can form and persist when agents are self-interested? Can such networks be efficient? A substantial theoretical literature predicts that the only networks that can form and persist must have very special shapes and that such…

Computer Science and Game Theory · Computer Science 2015-09-03 Yangbo Song , Mihaela van der Schaar

Processing large complex networks recently attracted considerable interest. Complex graphs are useful in a wide range of applications from technological networks to biological systems like the human brain. Sometimes these networks are…

Data Structures and Algorithms · Computer Science 2019-12-03 Christian Schulz

This article provides a taxonomy of current and past network modeling efforts. In all these efforts over the last few years we see a trend towards not only describing the network, but connected devices as well. This is especially current…

Networking and Internet Architecture · Computer Science 2014-03-06 Jeroen van der Ham , Mattijs Ghijsen , Paola Grosso , Cees de Laat

A network provides powerful means of representing complex relationships between entities by abstracting entities as vertices, and relationships as edges connecting vertices in a graph. Beyond the presence or absence of relationships, a…

Social and Information Networks · Computer Science 2020-01-15 Isuru Udayangani Hewapathirana

Clinical data from electronic medical records, registries or trials provide a large source of information to apply machine learning methods in order to foster precision medicine, e.g. by finding new disease phenotypes or performing…

Machine Learning · Computer Science 2020-08-17 Maria Hügle , Gabriel Kalweit , Thomas Huegle , Joschka Boedecker

We consider the dynamics of a reaction-diffusion system on a multigraph. The species share the same set of nodes but can access different links to explore the embedding spatial support. By acting on the topology of the networks we can…

Statistical Mechanics · Physics 2016-12-21 Malbor Asllani , Timoteo Carletti , Duccio Fanelli

Forecasting the evolution of contagion dynamics is still an open problem to which mechanistic models only offer a partial answer. To remain mathematically or computationally tractable, these models must rely on simplifying assumptions,…

Physics and Society · Physics 2021-08-18 Charles Murphy , Edward Laurence , Antoine Allard

Artificial neural networks in general and deep learning networks in particular established themselves as popular and powerful machine learning algorithms. While the often tremendous sizes of these networks are beneficial when solving…

Machine Learning · Computer Science 2020-05-28 Moritz Seiler , Heike Trautmann , Pascal Kerschke

A significant and rising proportion of the global population suffer from non-communicable diseases, such as neurological disorders. Neurorehabilitation aims to restore function and independence of neurological patients through providing…

Self-healing capability is one of the most critical factors for a resilient distribution system, which requires intelligent agents to automatically perform restorative actions online, including network reconfiguration and reactive power…

Systems and Control · Electrical Eng. & Systems 2021-05-11 Yichen Zhang , Feng Qiu , Tianqi Hong , Zhaoyu Wang , Fangxing Li

We consider the self organizing process of merging and regeneration of vertices in complex networks and demonstrate that a scale-free degree distribution emerges in a steady state of such a dynamics. The merging of neighbor vertices in a…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Beom Jun Kim , Ala Trusina , Petter Minnhagen , Kim Sneppen

Maximizing the damage by attacking specific nodes of the combat network can efficiently disrupt enemies' defense capability, protect our critical units, and enhance the resistance to the destruction of system-of-system~(SOS). However, the…

Systems and Control · Electrical Eng. & Systems 2022-12-26 Jintao Yu , Bing Xiao , Yuzhu Cui

We introduce and solve a general model of dynamic response under external perturbations. This model captures a wide range of systems out of equilibrium including Ising models of physical systems, social opinions, and population genetics.…

Exactly Solvable and Integrable Systems · Physics 2007-11-19 David D. Chinellato , Marcus A. M. de Aguiar , Irving R. Epstein , Dan Braha , Yaneer Bar-Yam

Self-adaptive dynamics occurs in many physical systems such as socio-economics, neuroscience, or biophysics. We formalize a self-adaptive modeling approach, where adaptation takes place within a set of strategies based on the history of the…

Adaptation and Self-Organizing Systems · Physics 2022-04-01 Konstantin Clauß , Christian Kuehn

While trade-offs between modeling effort and model accuracy remain a major concern with system identification, resorting to data-driven methods often leads to a complete disregard for physical plausibility. To address this issue, we propose…

Systems and Control · Electrical Eng. & Systems 2022-08-23 Oliver Schön , Ricarda-Samantha Götte , Julia Timmermann

A distributed algorithm is self-stabilizing if after faults and attacks hit the system and place it in some arbitrary global state, the systems recovers from this catastrophic situation without external intervention in finite time.…

Data Structures and Algorithms · Computer Science 2009-09-29 Samuel Bernard , Stéphane Devismes , Maria Gradinariu Potop-Butucaru , Sébastien Tixeuil

Complex systems which can be represented in the form of static and dynamic graphs arise in different fields, e.g. communication, engineering and industry. One of the interesting problems in analysing dynamic network structures is to monitor…

Machine Learning · Computer Science 2020-11-13 Anna Malinovskaya , Philipp Otto , Torben Peters