English
Related papers

Related papers: Dynamic modelling of a freshwater stream community…

200 papers

Network modeling techniques provide a means for quantifying social structure in populations of individuals. Data used to define social connectivity are often expensive to collect and based on case-specific, ad hoc criteria. Moreover, in…

Epiphytic communities offer an original framework to disentangle the contributions of environmental filters, biotic interactions and dispersal limitations to community structure at fine spatial scales. We determine here whether variations…

The dynamics of many microbial ecosystems are driven by cross-feeding interactions, in which metabolites excreted by some species are metabolised further by others. The population dynamics of such ecosystems are governed by…

Populations and Evolution · Quantitative Biology 2016-08-16 Björn Vessman , Philip Gerlee , Torbjörn Lundh

In view of recent microrheology experiments we re-examine the problem of a rigid sphere oscillating inside a dilute polymer network. The network and its solvent are treated using the two-fluid model. We show that the dynamics of the medium…

Soft Condensed Matter · Physics 2015-05-15 Haim Diamant

We discuss the ground state and the small-amplitude excitations of a degenerate vapour of fermionic atoms placed in two hyperfine states inside a spherical harmonic trap. An equations-of-motion approach is set up to discuss the hydrodynamic…

Statistical Mechanics · Physics 2009-10-31 M. Amoruso , I. Meccoli , A. Minguzzi , M. P. Tosi

A model of the dynamics of natural rotifer populations is described as a discrete nonlinear map depending on three parameters, which reflect characteristics of the population and environment. Model dynamics and their change by variation of…

Subcellular Processes · Quantitative Biology 2007-05-23 Faina S. Berezovskaya , Georgy P. Karev , Terry W. Snell

A plethora of computational models have been developed in recent decades to account for the morphogenesis of complex biological fluid networks, such as capillary beds. Contemporary adaptation models are based on optimization schemes where…

Tissues and Organs · Quantitative Biology 2021-11-16 Felix Kramer , Carl D. Modes

We study the hydrodynamic limit for a periodic $1$-dimensional exclusion process with a dynamical constraint, which prevents a particle at site $x$ from jumping to site $x\pm1$ unless site $x\mp1$ is occupied. This process with degenerate…

Probability · Mathematics 2020-10-23 Oriane Blondel , Clément Erignoux , Makiko Sasada , Marielle Simon

Several active organisms in nature tend to reside as a community in a viscous fluid medium. We analyze the variation of swimming characteristics of an active swimmer present in a dilute and disperse suspension, modeled as an effective…

Soft Condensed Matter · Physics 2021-10-04 Abyaya Dhar , P. S. Burada , G. P. Raja Sekhar

Despite great efforts over the past 50 years, the simulation of water still presents significant challenges and open questions. At room temperature and pressure, the collective molecular interactions and dynamics of water molecules may form…

Chemical Physics · Physics 2022-06-22 Riccardo Capelli , Francesco Muniz-Miranda , Giovanni M. Pavan

Tipping points occur in diverse systems in various disciplines such as ecology, climate science, economy or engineering. Tipping points are critical thresholds in system parameters or state variables at which a tiny perturbation can lead to…

In a floating water bridge the total radiation scattering of water stressed by a moderately strong electric field (1mV/nm) was compared to water without an applied electric field using X-ray and small angle neutron scattering. Structure…

Mesoscale and Nanoscale Physics · Physics 2016-03-25 Adam D. Wexler , Brigitte Bitschnau , Antonio Cervellino , Nicola Casati , Alan K. Soper , Jakob Woisetschläger , Elmar C. Fuchs

Throughout the animal kingdom, animals frequently benefit from living in groups. Models of collective behaviour show that simple local interactions are sufficient to generate group morphologies found in nature (swarms, flocks and mills).…

Biological Physics · Physics 2018-05-08 James G. Puckett , Aawaz R. Pokhrel , Julia A. Giannini

Thermal activation of a particle from a deep potential trap follows the Arrhenius law. Recently, this result was generalized for interacting diffusive particles in the trap, revealing two universality classes -- the Arrhenius class and the…

Statistical Mechanics · Physics 2024-11-19 Vishwajeet Kumar , Arnab Pal , Ohad Shpielberg

This is a short survey on recent results obtained by the authors on dynamical phase transitions of interacting particle systems. We consider particle systems with exclusion dynamics, but it is conjectured that our results should hold for a…

Probability · Mathematics 2013-10-22 Tertuliano Franco , Patrícia Gonçalves , Adriana Neumann

The population dynamics and stability of ecosystems of interacting species is studied from the perspective of non-equilibrium thermodynamics by assuming that species, through their biotic and abiotic interactions, are units of entropy…

Biological Physics · Physics 2007-05-23 Karo Michaelian

We consider a ring of fermionic quantum sites, modeled by the Fermi--Hubbard Hamiltonian, in which electrons can move and interact strongly via the Coulomb repulsion. The system is coupled to fermionic cold baths which by the exchange of…

Strongly Correlated Electrons · Physics 2025-02-24 Nikodem Szpak , Gernot Schaller , Ralf Schützhold , Jürgen König

Coral reefs are crucial to marine biodiversity and rely on a delicate symbiotic relationship between corals and zooxanthellae algae. Water temperature variations, however, disrupt this association, leading to coral bleaching events that…

Populations and Evolution · Quantitative Biology 2025-02-12 Maria Gabriella Cavalcante Basílio , Daniel Ratton Figueiredo

Collective behaviour in biological systems pitches us against theoretical challenges way beyond the borders of ordinary statistical physics. The lack of concepts like scaling and renormalization is particularly grievous, as it forces us to…

Statistical Mechanics · Physics 2017-10-11 A. Cavagna , D. Conti , C. Creato , L. Del Castello , I. Giardina , T. S. Grigera , S. Melillo , L. Parisi , M. Viale

Swimming micro-organisms such as bacteria or spermatozoa are typically found in dense suspensions, and exhibit collective modes of locomotion qualitatively different from that displayed by isolated cells. In the dilute limit where…

Biological Physics · Physics 2010-05-02 Sebastien Michelin , Eric Lauga