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Related papers: Double strand breaks in DNA resulting from double-…

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Double-strand breaks (DSBs) in DNA are naturally occurring destructive events in all organisms that may lead to genome instability. Cells employ various repair methods known as non-homologous end joining (NHEJ), microhomology mediated end…

DNA double-strand breaks (DSBs) represent a serious source of damage for all living things and thus there have been many quantitative studies of DSBs both in vivo and in vitro. Despite this fact, the processes that lead to their production…

Biomolecules · Quantitative Biology 2015-06-05 Shunsuke F. Shimobayashi , Takafumi Iwaki , Toshiaki Mori , Kenichi Yoshikawa

The understanding of inactivation radiobiological mechanism in individual cells is important when from one side the application of ionizing radiation to tumour therapy and from the other side the protection against radiation are to be…

Biological Physics · Physics 2008-02-01 J. Barilla , M. Lokajíček , P. Simr

According to the experimental evidence damage induced by densely ionizing radiation in mammalian cells is distributed along the DNA molecule in the form of clusters. The most critical constituent of DNA damage are double-strand breaks…

Biological Physics · Physics 2007-05-23 E. Gudowska-Nowak , M. Kraemer , G. Kraft , G. Taucher-Scholz

We report in situ single-molecule measurements of proton-induced double-strand breaks (DSBs) in DNA immersed in water, using real-time fluorescence tracking along the entire proton path, including the Bragg peak region. By chemically…

Biological Physics · Physics 2025-10-03 R. Liénard , P. Barberet , K. Chatzipapas , G. Devès , T. Dhôte , T. Guérin , H. Seznec , F. Gobet

The variation of the oxygen enhancement ratio (OER) across Linear Energy Transfer (LET) currently lacks a comprehensive mechanistic interpretation and a mechanistic model. Our earlier research revealed a significant correlation between the…

Biological Physics · Physics 2025-10-15 Ankang Hu , Wanyi Zhou , Xiyu Luo , Rui Qiu , Junli Li

In order to study the molecular damage induced in the form of single-strand and double-strand breaks by the ionizing radiation at the DNA level, Geant4-DNA Monte Carlo simulation code for complete transportation of primary protons and other…

Biological Physics · Physics 2018-10-10 Mojtaba Mokari , Mohammad Hassan Alamatsaz , Hossein Moeini , Reza Taleei

Purpose: Auger emitters exhibit interesting features due to their emission of a cascade of short-range Auger electrons. Maximum DNA breakage efficacy is achieved when decays occur near DNA. Studies of double-strand breaks (DSBs) yields in…

Medical Physics · Physics 2024-09-18 Mario Enrique Alcocer Ávila , Elif Hindié , Christophe Champion

The target theory is the most classical hypothesis explaining radiation-induced cell death, the physical or biological nature of the "target" remains ambiguous. This study hypothesizes that the distribution of DNA double-strand breaks…

Medical Physics · Physics 2025-06-11 Ankang Hu , Wanyi Zhou , Xiyu Luo , Rui Qiu , Junli Li

We propose a multi-scale approach to understand the physics related to ion-beam cancer therapy. It allows the calculation of the probability of DNA damage as a result of irradiation of tissues with energetic ions, up to 430 MeV/u. This…

Biological Physics · Physics 2009-11-13 Andrey V. Solov'yov , Eugene Surdutovich , Emanuele Scifoni , Igor Mishustin , Walter Grainer

The mechanism of threshold elongation (overstretching) of DNA macromolecules under the action of external force is studied within the framework of phenomenological approach. When considering the task it is taken into account that…

Biomolecules · Quantitative Biology 2016-02-22 Sergey N. Volkov

In mammalian cells, repair centers for DNA double-strand breaks (DSBs) have been identified. However, previous researches predominantly rely on methods that induce specific DSBs by cutting particular DNA sequences. The clustering and its…

Biological Physics · Physics 2024-10-07 Junyi Chen , Wenzong Ma , Yuqi Ma , Gen Yang

We propose an inclusive approach for calculating characteristics of secondary electrons produced by ions/protons in tissue-like media. This approach is based on an analysis of the projectile's interaction with the medium on the microscopic…

Biological Physics · Physics 2009-11-13 E. Surdutovich , O. I. Obolensky , E. Scifoni , I. Pshenichnov , I. Mishustin , A. V. Solov'yov , W. Greiner

Although DNA damage is widely viewed as a critical target for the induction of cell killing by ionizing radiation, the exact nature of DNA damage responsible for these effects is unknown. To address this issue, the probability of forming…

Biological Physics · Physics 2016-08-16 Pavel Kundrát , Robert D. Stewart

We propose a multi-scale approach to understanding physics related to the ion/proton-beam cancer therapy and calculation of the probability of the DNA damage as a result of irradiation of patients with energetic (up to 430 MeV/u) ions. This…

Biological Physics · Physics 2009-11-13 A. V. Solov'yov , E. Surdutovich , E. Scifoni , I. Mishustin , W. Greiner

Due to the physical and chemical processes that are involved, interactions of ionizing radiations with cells lead to single- and double-strand breaks (SSB and DSB) and base damage to DNA cells. The damage may kill the cells or may be…

We propose a scar model to reproduce how double-strand breaks occur in the telomeric DNA damaged by the effect of the $\beta$-decay of tritium to helium. In this scar model, the two hydrogens bonded to the 5$^\prime$ carbon connecting the…

Soft Condensed Matter · Physics 2024-12-12 Hiroaki Nakamura , Kento Ishiguro , Ayako Nakata , Shunsuke Usami , Seiki Saito , Susumu Fujiwara

The radiation-induced damages in bio-molecules are ubiquitous processes in radiotherapy, radio-biology and critical to space-projects. In this study we present a precise quantification of the fragmentation mechanisms of deoxyribonucleic…

Biological Physics · Physics 2022-01-28 Santosh KC , Ramin Abolfath

Ion beams have been widely applied in a few biological research fields such as radioactive breeding, health protection, and tumor therapy. Up to now many interesting and impressive achievements in biology and agriculture have been made.…

Biological Physics · Physics 2011-02-02 Wei Wang , Zengliang Yu , Wenhui Su

Bantele and colleagues recently reported that repair of a single CRISPR/Cas9-induced DNA double-strand break (DSB) in the c-MYC topologically associated domain leads to a persistent depletion of chromatin interactions and long-term…

Cell Behavior · Quantitative Biology 2025-12-01 Yi Wang , Shu-Feng Zhou
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