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Understanding the stability of complex communities is a central focus in ecology, many important theoretical advancements have been made to identify drivers of ecological stability. However, previous results often rely on the…

Populations and Evolution · Quantitative Biology 2025-04-04 Shuaiying Wang , Yuguang Yang , Aming Li

The study of biological cells in terms of mesoscopic, nonequilibrium, nonlinear, stochastic dynamics of open chemical systems provides a paradigm for other complex, self-organizing systems with ultra-fast stochastic fluctuations, short-time…

Chemical Physics · Physics 2014-11-06 Hong Qian

The basic laws of physics are simple, so why is the world complex? The theory of self-organized criticality posits that complex behavior in nature emerges from the dynamics of extended, dissipative systems that evolve through a sequence of…

Statistical Mechanics · Physics 2007-05-23 Maya Paczuski , Per Bak

General criterion for best efficiency of the interaction of a complex system with an ever-changing environment is derived. Its exclusive property, set by boundedness, is that the highly non-trivial interplay between parameters that…

Adaptation and Self-Organizing Systems · Physics 2014-03-12 Maria K. Koleva

A big challenge in current biology is to understand the exact self-organization mechanism underlying complex multi-physics coupling developmental processes. With multiscale computations of from subcellular gene expressions to cell…

Cell Behavior · Quantitative Biology 2021-05-18 Xiaoliang Wang , Dongyun Bai

Social evolutionary theory seeks to explain increases in the scale and complexity of human societies, from origins to present. Over the course of the twentieth century, social evolutionary theory largely fell out of favor as a way of…

Multiagent Systems · Computer Science 2025-02-27 David H. Wolpert , Kyle Harper

Complex adaptive systems have been the subject of much recent attention. It is by now well-established that members (`agents') tend to self-segregate into opposing groups characterized by extreme behavior. However, while different social…

Condensed Matter · Physics 2009-11-07 Shahar Hod , Ehud Nakar

As early indicated by Charles Darwin, languages behave and change very much like living species. They display high diversity, differentiate in space and time, emerge and disappear. A large body of literature has explored the role of…

Populations and Evolution · Quantitative Biology 2010-04-27 Ricard V. Solé , Bernat Corominas-Murtra , Jordi Fortuny

The interaction between natural selection and random mutation is frequently debated in recent years. Does similar dilemma also exist in the evolution of real networks such as biological networks? In this paper, we try to discuss this issue…

Statistical Mechanics · Physics 2009-01-07 Zhen Shao , Hai-jun Zhou

The study of flocking in biological systems has identified conditions for self-organized collective behavior, inspiring the development of decentralized strategies to coordinate the dynamics of swarms of drones and other autonomous…

Disordered Systems and Neural Networks · Physics 2025-11-05 Arthur N. Montanari , Ana Elisa D. Barioni , Chao Duan , Adilson E. Motter

With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

Condensed Matter · Physics 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park

We analyze a model of interacting agents (e.g. prebiotic chemical species) which are represended by nodes of a network, whereas their interactions are mapped onto directed links between these nodes. On a fast time scale, each agent follows…

Populations and Evolution · Quantitative Biology 2009-11-13 Adrian M. Seufert , Frank Schweitzer

Current analyses of genomes from numerous species show that the diversity of organism's functional and behavioral characters is not proportional to the number of genes that encode the organism. We investigate the hypothesis that the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Olof Goernerup , James P. Crutchfield

Despite the obvious advantage of simple life forms capable of fast replication, different levels of cognitive complexity have been achieved by living systems in terms of their potential to cope with environmental uncertainty. Against the…

Populations and Evolution · Quantitative Biology 2017-10-18 Luís F Seoane , Ricard Solé

Researchers have proposed that the distinction between so-called "simple" and "complex" societies can be expressed by an increase in the number of levels at which functional organization, interaction, and thus selection, operate. In spite…

adap-org · Physics 2007-05-23 Carl Lipo , Mark Madsen

Following extensive numerical experiments, it has been suggested that the evolution of competing computer programs in artificial life simulations shows signs of being a self-organized critical process. The primary evidence for this claim…

adap-org · Physics 2009-10-30 M. E. J. Newman , Simon M. Fraser , Kim Sneppen , William A. Tozier

Ecological systems comprise an astonishing diversity of species that cooperate or compete with each other forming complex mutual dependencies. The minimum requirements to maintain a large species diversity on long time scales are in general…

Populations and Evolution · Quantitative Biology 2012-09-10 Joachim Mathiesen , Namiko Mitarai , Kim Sneppen , Ala Trusina

Biological systems often consist of a small number of constituents and are therefore inherently noisy. To function effectively, these systems must employ mechanisms to constrain the accumulation of noise. Such mechanisms have been…

Statistical Mechanics · Physics 2024-09-04 Felix J. Meigel , Steffen Rulands

We argue that the coordination of the activities of individual complex agents enables a system to develop and sustain complexity at a higher level. We exemplify relevant mechanisms through computer simulations of a toy system, a coupled map…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Fatihcan M. Atay , Jürgen Jost

In [N. A. Baas, Emergence, Hierarchies, and Hyper-structures, in C.G. Langton ed., Artificial Life III, Addison Wesley, 1994.] a general framework for the study of Emergence and hyper-structure was presented. This approach is mostly…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Babak Hodjat , Makoto Amamiya