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We introduce rd-spiral, an open-source Python library for simulating 2D reaction-diffusion systems using pseudo-spectral methods. The framework combines FFT-based spatial discretization with adaptive Dormand-Prince time integration,…

Pattern Formation and Solitons · Physics 2025-06-26 Sandy H. S. Herho , Iwan P. Anwar , Rusmawan Suwarman

Diffusion of particles through an heterogenous obstacle line is modeled as a two-dimensional diffusion problem with a one--directional nonlinear convective drift and is examined using two-scale asymptotic analysis. At the scale where the…

Analysis of PDEs · Mathematics 2018-04-24 Emilio N. M. Cirillo , Ida de Bonis , Adrian Muntean , Omar Richardson

The modeling of complex reaction-diffusion processes in, for instance, cellular biochemical networks or self-assembling soft matter can be tremendously sped up by employing a multiscale algorithm which combines the mesoscopic Green's…

Molecular Networks · Quantitative Biology 2017-04-05 Adithya Vijaykumar , Thomas E. Ouldridge , Pieter Rein ten Wolde , Peter G. Bolhuis

The dynamics of solid-liquid interfaces controlled by solute precipitation and/or dissolution due to the chemical reaction at the interface were computed in two dimensions using a phase field models. Sharp-interface asymptotic analysis…

Computational Physics · Physics 2018-08-30 Zhijie Xu , Hai Huang , Xiaoyi Li , Paul Meakin

Rapidly rotating Rayleigh-B\'enard convection is studied by combining results from direct numerical simulations (DNS), laboratory experiments and asymptotic modeling. The asymptotic theory is shown to provide a good description of the bulk…

Fluid Dynamics · Physics 2015-06-23 S. Stellmach , M. Lischper , K. Julien , G. Vasil , J. S. Cheng , A. Ribeiro , E. M. King , J. M. Aurnou

In a recent article the most general non-uniform reaction-diffusion models on a one-dimensional lattice with boundaries were considered, for which the time evolution equations of correlation functions are closed and the stationary profile…

Statistical Mechanics · Physics 2011-08-09 Amir Aghamohammadi , Mohammad Khorrami

The reaction-diffusion equation is one of the cornerstones equations in applied science and engineering. In the present study, a deep neural network has been trained in order to predict the solution of the equation with different…

Machine Learning · Computer Science 2019-12-12 Amin Karimi Monsefi , Rana Bakhtiyarzade

We investigate Turing instability and pattern formation in two-dimensional domains for two reaction-diffusion models, obtained as diffusive limits of kinetic equations for mixtures of monatomic and polyatomic gases. The first model is of…

Mathematical Physics · Physics 2026-02-23 Stefano Boccelli , Giorgio Martalò , Romina Travaglini

We propose a heterogeneous reaction-diffusion model for the hydration and setting of cement. The model is based on diffusional ion transport and on cement specific chemical dissolution/precipitation reactions under spatial heterogeneous…

Condensed Matter · Physics 2009-10-28 F. Tzschichholz , H. J. Herrmann , H. Zanni

A reaction network is a chemical system involving multiple reactions and chemical species. Stochastic models of such networks treat the system as a continuous time Markov chain on the number of molecules of each species with reactions as…

Probability · Mathematics 2007-05-23 Karen Ball , Thomas G. Kurtz , Lea Popovic , Greg Rempala

We consider a stochastically perturbed reaction diffusion equation in a bounded interval, with boundary conditions imposing the two stable phases at the endpoints. We investigate the asymptotic behavior of the front separating the two…

Mathematical Physics · Physics 2016-02-11 L. Bertini , S. Brassesco , P. Buttà

The rupture of dry frictional interfaces occurs through the propagation of fronts breaking the contacts at the interface. Recent experiments have shown that the velocities of these rupture fronts range from quasi-static velocities…

Mass conservation in chemical species appears in a broad class of reaction-diffusion systems (RDs) and is known to bring about coarsening of the pattern in chemical concentration. Recent theoretical studies on RDs with mass conservation…

Statistical Mechanics · Physics 2021-06-16 Michio Tateno , Shuji Ishihara

We demonstrate the validity of the complex scaling method for realistic strong, non-local, nucleon- nucleon interactions by comparing the deuteron bound state and nucleon-nucleon scattering phase shifts with results from other…

Nuclear Theory · Physics 2015-03-05 G. Papadimitriou , J. P. Vary

We introduce a model of two coupled reaction-diffusion equations to describe the dynamics and propagation of flame fronts in random media. The model incorporates heat diffusion, its dissipation, and its production through coupling to the…

Condensed Matter · Physics 2016-08-15 N. Provatas , T. Ala-Nissila , M. Grant , K. R. Elder , L. Piché

The role of dimensionality (Euclidean versus fractal), spatial extent, boundary effects and system topology on the efficiency of diffusion-reaction processes involving two simultaneously-diffusing reactants is analyzed. We present…

Statistical Mechanics · Physics 2009-11-10 Jonathan L. Bentz , John J. Kozak , E. Abad , G. Nicolis

A new diffuse interface model for a two-phase flow of two incompressible fluids with different densities is introduced using methods from rational continuum mechanics. The model fulfills local and global dissipation inequalities and is also…

Fluid Dynamics · Physics 2010-11-03 Helmut Abels , Harald Garcke , Günther Grün

We revisit the sharp-interface continuum thermodynamics of two-phase multicomponent fluid systems with interfacial mass. Since the published work is not fully consistent, we provide a rigorous derivation of the local balance equations and…

Fluid Dynamics · Physics 2022-08-15 Dieter Bothe

Reaction-diffusion systems, which consist of the reacting particles subject to diffusion process, constitute one of the common examples of non-linear statistical systems. In low space dimensions $d \leq 2$ the usual description by means of…

Statistical Mechanics · Physics 2023-10-24 Michal Hnatič , Matej Kecer , Tomáš Lučivjanský

Structural materials are broadly used in applications such as nuclear vessels, high-temperature processes, and civil construction. Usually, during their placing and lifespan, they may present free or chemically bonded liquid phases in their…

Materials Science · Physics 2021-03-29 M. H. Moreira , R. F. Ausas , S. Dal Pont , P. I. Pelissari , A. P. Luz , V. C. Pandolfelli