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In recent years non-demographic variability has been shown to greatly affect dynamics of stochastic populations. For example, non-demographic noise in the form of a bursty reproduction process with an a-priori unknown burst size, or…

Populations and Evolution · Quantitative Biology 2018-06-13 Ohad Vilk , Michael Assaf

A fundamental goal of microbial ecology is to understand what determines the diversity, stability, and structure of microbial ecosystems. The microbial context poses special conceptual challenges because of the strong mutual influences…

Biological Physics · Physics 2019-03-06 Robert Marsland , Wenping Cui , Joshua Goldford , Alvaro Sanchez , Kirill Korolev , Pankaj Mehta

Many biological and chemical systems could be modeled by a population of oscillators coupled indirectly via a dynamical environment. Essentially, the environment by which the individual elements communicate is heterogeneous. Nevertheless,…

Chaotic Dynamics · Physics 2017-05-24 Bing-Wei Li , Xiao-Zhi Cao , Chenbo Fu

We propose a general model to study the interplay between spatial dispersal and environment spatiotemporal fluctuations in metapopulation dynamics. An ecological landscape of favorable patches is generated like a L\'{e}vy dust, which allows…

Populations and Evolution · Quantitative Biology 2015-08-20 E. H. Colombo , C. Anteneodo

Population cycles are important components of many natural systems. Most studied in short-lived and small-bodied species, cycles frequently appear to be driven by density-dependent feedbacks. However, compelling evidence of cycles -- often…

Populations and Evolution · Quantitative Biology 2026-01-22 Marron McConnell , William F. Fagan

We study the effect that disturbances in the ecological landscape exert on the spatial distribution of a population that evolves according to the nonlocal FKPP equation. Using both numerical and analytical techniques, we explore the three…

Adaptation and Self-Organizing Systems · Physics 2021-07-12 Vivian Dornelas , Eduardo H. Colombo , Cristóbal López , Emilio Hernández-García , Celia Anteneodo

Spontaneous cortical population activity exhibits a multitude of oscillatory patterns, which often display synchrony during slow-wave sleep or under certain anesthetics and stay asynchronous during quiet wakefulness. The mechanisms behind…

Neurons and Cognition · Quantitative Biology 2018-06-20 Rodrigo F. O. Pena , Michael A. Zaks , Antonio C. Roque

We show that the simplest stochastic epidemiological models with spatial correlations exhibit two types of oscillatory behaviour in the endemic phase. In a large parameter range, the oscillations are due to resonant amplification of…

Populations and Evolution · Quantitative Biology 2009-06-02 Ganna Rozhnova , Ana Nunes

Collective behavior in cellular populations is coordinated by biochemical signaling networks within individual cells. Connecting the dynamics of these intracellular networks to the population phenomena they control poses a considerable…

Biological Physics · Physics 2014-06-27 Allyson E. Sgro , David J. Schwab , Javad Noorbakhsh , Troy Mestler , Pankaj Mehta , Thomas Gregor

Spatial distribution of the human population is distinctly heterogeneous, e.g. showing significant difference in the population density between urban and rural areas. In the historical perspective, i.e. on the timescale of centuries, the…

Adaptation and Self-Organizing Systems · Physics 2022-08-30 Anna Zincenko , Sergei Petrovskii , Vitaly Volpert

Population dynamics in random ecological networks are investigated by analyzing a simple deterministic equation. It is found that a sequence of abrupt changes of populations punctuating quiescent states characterize the long time behavior.…

chao-dyn · Physics 2008-02-03 Shin-ichi Sasa , Tsuyoshi Chawanya

We model hypothetical bio-dispersal within a single Galactic region using the stochastic infection dynamics process, which is inspired by these local properties of life dispersal on Earth. We split the population of stellar systems into…

Earth and Planetary Astrophysics · Physics 2022-04-27 Andjelka B. Kovacevic

We study the phenomenon of cyclic dominance in the paradigmatic Rock--Paper--Scissors model, as occurring in both stochastic individual-based models of finite populations and in the deterministic replicator equations. The mean-field…

Populations and Evolution · Quantitative Biology 2017-08-03 Qian Yang , Tim Rogers , Jonathan H P Dawes

Mutations in a microbial population can increase the frequency of a genotype not only by increasing its exponential growth rate, but also by decreasing its lag time or adjusting the yield (resource efficiency). The contribution of multiple…

Populations and Evolution · Quantitative Biology 2018-02-15 Michael Manhart , Bharat V. Adkar , Eugene I. Shakhnovich

We investigate the complex spatiotemporal dynamics of an ecological network with species dispersal mediated via a mean-field coupling. The local dynamics of the network are governed by the Truscott--Brindley model, which is an important…

Adaptation and Self-Organizing Systems · Physics 2017-09-13 Ramesh Arumugam , Tanmoy Banerjee , Partha Sharathi Dutta

Interactions in ecological communities are inherently nonlinear and can lead to complex population dynamics including irregular fluctuations induced by chaos. Chaotic population dynamics can exhibit violent oscillations with extremely small…

Populations and Evolution · Quantitative Biology 2007-08-29 Frank M. Hilker , Frank H. Westerhoff

Complex dynamical systems may exhibit multiple steady states, including time-periodic limit cycles, where the final trajectory depends on initial conditions. With tuning of parameters, limit cycles can proliferate or merge at an exceptional…

Statistical Mechanics · Physics 2024-12-03 Sergei Shmakov , Peter B. Littlewood

We consider the effect of network structure on the evolution of a population. Models of this kind typically consider a population of fixed size and distribution. Here we consider eco-evolutionary dynamics where population size and…

Populations and Evolution · Quantitative Biology 2023-04-05 Karan Pattni , Wajid Ali , Mark Broom , Kieran J Sharkey

Social dilemmas are an integral part of social interactions. Cooperative actions, ranging from secreting extra-cellular products in microbial populations to donating blood in humans, are costly to the actor and hence create an incentive to…

Populations and Evolution · Quantitative Biology 2016-05-26 Chaitanya S. Gokhale , Christoph Hauert

Microbial communities are ubiquitous in nature and come in a multitude of forms, ranging from communities dominated by a handful of species to communities containing a wide variety of metabolically distinct organisms. This huge range in…

Biological Physics · Physics 2021-11-02 Amir Erez , Jaime G. Lopez , Yigal Meir , Ned S. Wingreen