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Under conditions of limited fixed-nitrogen, some filamentous cyanobacteria develop a regular pattern of heterocyst cells that fix nitrogen for the remaining vegetative cells. We examine three different heterocyst placement strategies by…

Biological Physics · Physics 2015-03-20 Aidan I. Brown , Andrew D. Rutenberg

When deprived of fixed nitrogen (fN), certain filamentous cyanobacteria differentiate nitrogen-fixing heterocysts. There is a large and dynamic fraction of stored fN in cyanobacterial cells, but its role in directing heterocyst commitment…

Biological Physics · Physics 2015-06-18 Aidan I Brown , Andrew D Rutenberg

Cyanobacteria forming one-dimensional filaments are paradigmatic model organisms of the transition between unicellular and multicellular living forms. Under nitrogen limiting conditions, in filaments of the genus Anabaena, some cells…

Cell Behavior · Quantitative Biology 2016-10-10 Javier Munoz-Garcia , Saul Ares

A comprehensive approach to cellular differentiation in cyanobacteria is developed. To this aim, the process of heterocyst cell formation is studied under a systems biology point of view. By relying on statistical physics techniques, we…

Cell Behavior · Quantitative Biology 2015-04-30 Alejandro Torres-Sanchez , Jesus Gomez-Gardenes , Fernando Falo

Cyanobacteria sequester photosynthetic enzymes into microcompartments which facilitate the conversion of carbon dioxide into sugars. Geometric similarities between these structures and self-assembling viral capsids have inspired models that…

Soft Condensed Matter · Physics 2018-07-10 Grant M. Rotskoff , Phillip L. Geissler

All materials enter or exit the cell nucleus through nuclear pore complexes (NPCs), efficient transport devices that combine high selectivity and throughput. A central feature of this transport is the binding of cargo-carrying soluble…

Cell Behavior · Quantitative Biology 2015-06-26 A. Zilman , S. DiTalia , B. T. Chait , M. P Rout , M. O. Magnasco

Filamentous cyanobacteria are one of the oldest and today still most abundant lifeforms on earth, with manifold implications in ecology and economics. Their flexible filaments, often several hundred cells long, exhibit gliding motility in…

Many active systems are capable of forming intriguing patterns at scales significantly larger than the size of their individual constituents. Cyanobacteria are one of the most ancient and important phyla of organisms that has allowed the…

Soft Condensed Matter · Physics 2024-11-28 Jan Cammann , Mixon K. Faluweki , Nayara Dambacher , Lucas Goehring , Marco G. Mazza

Many organisms repartition their proteome in a circadian fashion in response to the daily nutrient changes in their environment. A striking example is provided by cyanobacteria, which perform photosynthesis during the day to fix carbon.…

Molecular Networks · Quantitative Biology 2018-05-15 Michele Monti , David K. Lubensky , Pieter Rein ten Wolde

It has been observed that the growth of the nucleus and the cytoplasm is coordinated during cell growth, resulting in a nearly constant nuclear-to-cell volume ratio (N/C) throughout the cell cycle. Previous studies have shown that the N/C…

Cell Behavior · Quantitative Biology 2025-10-29 Xuesong Bai , Thomas G. Fai

The fractionation of nitrogen (N) in star-forming regions is a poorly understood process. To put more stringent observational constraints on the N-fractionation, we have observed with the IRAM-30m telescope a large sample of 66 cores in…

Solar and Stellar Astrophysics · Physics 2018-05-02 L. Colzi , F. Fontani , V. M. Rivilla , A. Sánchez-Monge , L. Testi , M. T. Beltrán , P. Caselli

Upon growth on dinitrogen, the filamentous cyanobacterium Nostoc PCC 7120 initiates metabolic and morphological changes. We analyzed the expression of 1249 genes from major metabolic categories under nitrogen fixing and non-nitrogen fixing…

Genomics · Quantitative Biology 2007-05-23 R. Wunschiers , R. Axelsson , P. Lindblad

In response to natural or anthropocentric pollutions coupled to global climate changes, microorganisms from aquatic environments can suddenly accumulate on water surface. These dense suspensions, known as blooms, are harmful to ecosystems…

Biological Physics · Physics 2015-11-16 Julien Dervaux , Annick Méjean , Philippe Brunet

Bacterial cellulose biofilms are complex networks of strong interwoven nanofibers that control transport and protect bacterial colonies in the film. Design of diverse applications of bacterial cellulose films also relies on understanding…

Soft Condensed Matter · Physics 2022-06-09 Firoozeh Babayekhorasani , Maryam Hosseini , Patrick T. Spicer

Filamentous cyanobacteria can show fascinating examples of nonequilibrium self-organization, which however are not well-understood from a physical perspective. We investigate the motility and collective organization of colonies of these…

Soft Condensed Matter · Physics 2023-10-20 Mixon K. Faluweki , Jan Cammann , Marco G. Mazza , Lucas Goehring

Non-monotonic retention profiles (NRP) have been observed in numerous studies of colloidal-nano flows in porous media. For the first time, we explain the phenomenon by distributed particle properties (size, shape, surface charge). We…

Soft Condensed Matter · Physics 2019-05-21 Gabriel Malgaresi , Ben Collins , Paul Alvaro , Pavel Bedrikovetsky

We study the clustering of a model cyanobacterium \textit{Synechocystis} into microcolonies. The bacteria are allowed to diffuse onto surfaces of different hardness, and interact with the others by aggregation and detachment. We find that…

Biological Physics · Physics 2020-03-04 Thomas Vourc'h , Julien Léopoldès , Hassan Peerhossaini

Filamentous cyanobacteria, forming long strands of connected cells, are one of the earliest and most successful forms of life on Earth. They exhibit self-organised behaviour, forming large-scale patterns in structures like biomats and…

Biological Physics · Physics 2022-08-01 Mixon K. Faluweki , Lucas Goehring

The effects of water wetting conditions on the transport properties of molecular nano-junctions are investigated theoretically by using a combination of classical molecular dynamics and first principles electronic transport calculations.…

Mesoscale and Nanoscale Physics · Physics 2015-05-18 I. Rungger , X. Chen , U. Schwingenschlögl , S. Sanvito

Nuclear pore complexes (NPCs) mediate the exchange of materials between the nucleoplasm and cytoplasm, playing a key role in the separation of nucleic acids and proteins into their required compartments. The static structure of the NPC is…

Biomolecules · Quantitative Biology 2023-04-07 David Cowburn , Michael Rout
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