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200 papers

We show that the protein-protein interaction networks can be surprisingly well described by a very simple evolution model of duplication and divergence. The model exhibits a remarkably rich behavior depending on a single parameter, the…

Molecular Networks · Quantitative Biology 2009-11-10 I. Ispolatov , P. L. Krapivsky , A. Yuryev

Using a simple model with link removals as well as link additions, we show that an evolving network is scale free with a degree exponent in the range of (2, 4]. We then establish a relation between the network evolution and a set of…

Mathematical Physics · Physics 2007-05-23 Dinghua Shi , Liming Liu , Xiang Zhu , Huijie Zhou , Binbin Wang

During the past two decades, percolation has long served as a basic paradigm for network resilience, community formation and so on in complex systems. While the percolation transition is known as one of the most robust continuous…

Physics and Society · Physics 2018-08-03 Deokjae Lee , Y. S. Cho , K. -I. Goh , D. -S. Lee , B. Kahng

Evolving out-of-equilibrium networks have been under intense scrutiny recently. In many real-world settings the number of links added per new node is not constant but depends on the time at which the node is introduced in the system. This…

Physics and Society · Physics 2009-10-08 David M. D. Smith , Jukka-Pekka Onnela , Neil F. Johnson

Growing networks have a causal structure. We show that the causality strongly influences the scaling and geometrical properties of the network. In particular the average distance between nodes is smaller for causal networks than for…

Disordered Systems and Neural Networks · Physics 2009-11-11 P. Bialas , Z. Burda , B. Waclaw

The emergence of large-scale connectivity and synchronization are crucial to the structure, function and failure of many complex socio-technical networks. Thus, there is great interest in analyzing phase transitions to large-scale…

Physics and Society · Physics 2019-10-02 Raissa M. D'Souza , Jesus Gómez-Gardeñes , Jan Nagler , Alex Arenas

Network growth is currently explained through mechanisms that rely on node prestige measures, such as degree or fitness. In many real networks those who create and connect nodes do not know the prestige values of existing nodes, but only…

Disordered Systems and Neural Networks · Physics 2007-05-23 Santo Fortunato , Alessandro Flammini , Filippo Menczer

Our current world is linked by a complex mesh of networks where information, people and goods flow. These networks are interdependent each other, and present structural and dynamical features different from those observed in isolated…

Physics and Society · Physics 2013-11-13 Filippo Radicchi , Alex Arenas

A network as a substrate for dynamic processes may have its own dynamics. We propose a model for networks which evolve together with diffusing particles through a coupled dynamics, and investigate emerging structural property. The model…

Statistical Mechanics · Physics 2009-11-10 Sang-Woo Kim , Jae Dong Noh

We propose a novel model-selection method for dynamic networks. Our approach involves training a classifier on a large body of synthetic network data. The data is generated by simulating nine state-of-the-art random graph models for dynamic…

Social and Information Networks · Computer Science 2024-05-28 Lourens Touwen , Doina Bucur , Remco van der Hofstad , Alessandro Garavaglia , Nelly Litvak

Spreading (diffusion) of innovations is a stochastic process on social networks. When the key driving mechanism is peer effects (word of mouth), the rate at which the aggregate adoption level increases with time depends strongly on the…

Probability · Mathematics 2023-12-12 Gadi Fibich , Tomer Levin

Many networks are complex dynamical systems, where both attributes of nodes and topology of the network (link structure) can change with time. We propose a model of co-evolving networks where both node at- tributes and network structure…

Social and Information Networks · Computer Science 2011-06-15 Yoon-Sik Cho , Greg Ver Steeg , Aram Galstyan

We consider the population dynamics of a set of species whose network of catalytic interactions is described by a directed graph. The relationship between the attractors of this dynamics and the underlying graph theoretic structures like…

adap-org · Physics 2009-10-30 Sanjay Jain , Sandeep Krishna

We offer a solution to a long-standing problem in the physics of networks, the creation of a plausible, solvable model of a network that displays clustering or transitivity -- the propensity for two neighbors of a network node also to be…

Statistical Mechanics · Physics 2009-08-13 M. E. J. Newman

We use a generalised version of the individual-based Tangled Nature model of evolutionary ecology to study the relationship between ecosystem structure and evolutionary history. Our evolved model ecosystems typically exhibit interaction…

Populations and Evolution · Quantitative Biology 2007-05-23 Simon Laird , Henrik Jeldtoft Jensen

We found that models of evolving random networks exhibit dynamic scaling similar to scaling of growing surfaces. It is demonstrated by numerical simulations of two variants of the model in which nodes are added as well as removed [Phys.…

Statistical Mechanics · Physics 2009-11-07 Miroslav Kotrla , Frantisek Slanina , Jakub Steiner

How a complex network is connected crucially impacts its dynamics and function. Percolation, the transition to extensive connectedness upon gradual addition of links, was long believed to be continuous but recent numerical evidence on…

Disordered Systems and Neural Networks · Physics 2011-03-07 Jan Nagler , Anna Levina , Marc Timme

We analyze a model of interacting agents (e.g. prebiotic chemical species) which are represended by nodes of a network, whereas their interactions are mapped onto directed links between these nodes. On a fast time scale, each agent follows…

Populations and Evolution · Quantitative Biology 2009-11-13 Adrian M. Seufert , Frank Schweitzer

We study a simple model of dynamic networks, characterized by a set preferred degree, $\kappa$. Each node with degree $k$ attempts to maintain its $\kappa$ and will add (cut) a link with probability $w(k;\kappa)$ ($1-w(k;\kappa)$). As a…

Physics and Society · Physics 2013-07-29 Wenjia Liu , Shivakumar Jolad , Beate Schmittmann , R. K. P. Zia

We consider propagation models that describe the spreading of an attribute, called "damage", through the nodes of a random network. In some systems, the average fraction of nodes that remain undamaged vanishes in the large system limit, a…

Cellular Automata and Lattice Gases · Physics 2007-05-23 Björn Samuelsson , Joshua E. S. Socolar