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Information extraction and user intention identification are central topics in modern query understanding and recommendation systems. In this paper, we propose DeepProbe, a generic information-directed interaction framework which is built…

Machine Learning · Statistics 2018-03-02 Zi Yin , Keng-hao Chang , Ruofei Zhang

CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that…

Prompt engineering has made significant contributions to the era of large language models, yet its effectiveness depends on the skills of a prompt author. This paper introduces $\textit{iPrOp}$, a novel interactive prompt optimization…

Computation and Language · Computer Science 2025-06-30 Jiahui Li , Roman Klinger

Conformance checking is a key process mining task for comparing the expected behavior captured in a process model and the actual behavior recorded in a log. While this problem has been extensively studied for pure control-flow processes,…

Artificial Intelligence · Computer Science 2021-04-20 Paolo Felli , Alessandro Gianola , Marco Montali , Andrey Rivkin , Sarah Winkler

AI systems represented by AlphaFold are rapidly expanding the scale of protein structure modelling data, and the MineProt project provides an effective solution for custom curation of these novel high-throughput data. It enables researchers…

Quantitative Methods · Quantitative Biology 2022-12-16 Yunchi Zhu , Chengda Tong , Zuohan Zhao , Zuhong Lu

This paper proposes a novel simulator IoTSim-Edge, which captures the behavior of heterogeneous IoT and edge computing infrastructure and allows users to test their infrastructure and framework in an easy and configurable manner.…

Data provenance, or data lineage, describes the life cycle of data. In scientific workflows on HPC systems, scientists often seek diverse provenance (e.g., origins of data products, usage patterns of datasets). Unfortunately, existing…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-03 Runzhou Han , Mai Zheng , Suren Byna , Houjun Tang , Bin Dong , Dong Dai , Yong Chen , Dongkyun Kim , Joseph Hassoun , David Thorsley , Matthew Wolf

Hospitals around the world collect massive amounts of physiological data from their patients every day. Recently, there has been an increase in research interest to subject this data to statistical analysis to gain more insights and provide…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-04 Anand Jayarajan , Kimberly Hau , Andrew Goodwin , Gennady Pekhimenko

ytopt is a Python machine-learning-based autotuning software package developed within the ECP PROTEAS-TUNE project. The ytopt software adopts an asynchronous search framework that consists of sampling a small number of input parameter…

Collecting and annotating morphological data present significant challenges, requiring linguistic expertise, methodological rigour, and substantial resources. These barriers are particularly acute for low-resource languages and varieties.…

Computation and Language · Computer Science 2026-04-07 Aso Mahmudi , Sina Ahmadi , Kemal Kurniawan , Rico Sennrich , Eduard Hovy , Ekaterina Vylomova

The recent Meltdown and Spectre attacks highlight the importance of automated verification techniques for identifying hardware security vulnerabilities. We have developed a tool for synthesizing microarchitecture-specific programs capable…

Cryptography and Security · Computer Science 2018-02-13 Caroline Trippel , Daniel Lustig , Margaret Martonosi

A major part of membrane function is conducted by proteins, both integral and peripheral. Peripheral membrane proteins temporarily adhere to biological membranes, either to the lipid bilayer or to integral membrane proteins with…

Biomolecules · Quantitative Biology 2014-06-27 Katerina C. Nastou , Georgios N. Tsaousis , Kimon E. Kremizas , Zoi I. Litou , Stavros J. Hamodrakas

Trust is a fundamental concept in many real-world applications such as e-commerce and peer-to-peer networks. In these applications, users can generate local opinions about the counterparts based on direct experiences, and these opinions can…

Databases · Computer Science 2012-11-12 Yuan Yao , Hanghang Tong , Xifeng Yan , Feng Xu , Jian Lu

Data clustering is a common unsupervised learning method frequently used in exploratory data analysis. However, identifying relevant structures in unlabeled, high-dimensional data is nontrivial, requiring iterative experimentation with…

Human-Computer Interaction · Computer Science 2018-11-29 Marco Cavallo , Çağatay Demiralp

Large language models (LLMs) have achieved remarkable multi-step reasoning capabilities across various domains. However, LLMs still face distinct challenges in complex logical reasoning, as (1) proof-finding requires systematic exploration…

Computation and Language · Computer Science 2025-09-16 Kang He , Kaushik Roy

Since the structure of complex networks is often unknown, we may identify the most influential seed nodes by exploring only a part of the underlying network, given a small budget for node queries. We propose IM-META, a solution to influence…

Social and Information Networks · Computer Science 2024-02-07 Cong Tran , Won-Yong Shin , Andreas Spitz

Proof assistants enable users to develop machine-checked proofs regarding software-related properties. Unfortunately, the interactive nature of these proof assistants imposes most of the proof burden on the user, making formal verification…

Software Engineering · Computer Science 2024-05-08 Pedro Carrott , Nuno Saavedra , Kyle Thompson , Sorin Lerner , João F. Ferreira , Emily First

Penetration testing, a critical component of cybersecurity, typically requires extensive time and effort to find vulnerabilities. Beginners in this field often benefit from collaborative approaches with the community or experts. To address…

Cryptography and Security · Computer Science 2024-11-07 Derry Pratama , Naufal Suryanto , Andro Aprila Adiputra , Thi-Thu-Huong Le , Ahmada Yusril Kadiptya , Muhammad Iqbal , Howon Kim

Network operators and researchers frequently use Internet measurement platforms (IMPs), such as RIPE Atlas, RIPE RIS, or RouteViews for, e.g., monitoring network performance, detecting routing events, topology discovery, or route…

Networking and Internet Architecture · Computer Science 2023-07-25 Pavlos Sermpezis , Lars Prehn , Sofia Kostoglou , Marcel Flores , Athena Vakali , Emile Aben

Accurate and complete product descriptions are crucial for e-commerce, yet seller-provided information often falls short. Customer reviews offer valuable details but are laborious to sift through manually. We present PRAISE: Product Review…

Computation and Language · Computer Science 2025-06-24 Adnan Qidwai , Srija Mukhopadhyay , Prerana Khatiwada , Dan Roth , Vivek Gupta