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This version is ***superseded*** by a full version that can be found at http://www.itu.dk/people/pagh/papers/mining-jour.pdf, which contains stronger theoretical results and fixes a mistake in the reporting of experiments. Abstract:…

Data Structures and Algorithms · Computer Science 2010-02-17 Andrea Campagna , Rasmus Pagh

Similarity search retrieves the nearest neighbors of a query vector from a dataset of high-dimensional vectors. As the size of the dataset grows, the cost of performing the distance computations needed to implement a query can become…

Machine Learning · Computer Science 2019-12-20 Soroosh Khoram , Stephen J Wright , Jing Li

A matching cut is a partition of the vertex set of a graph into two sets $A$ and $B$ such that each vertex has at most one neighbor in the other side of the cut. The MATCHING CUT problem asks whether a graph has a matching cut, and has been…

Data Structures and Algorithms · Computer Science 2019-05-09 Guilherme C. M. Gomes , Ignasi Sau

We study strategies of approximate pattern matching that exploit bidirectional text indexes, extending and generalizing ideas of Lam et al. We introduce a formalism, called search schemes, to specify search strategies of this type, then…

Data Structures and Algorithms · Computer Science 2015-09-08 Gregory Kucherov , Kamil Salikhov , Dekel Tsur

We propose a bounds-only pruning test for exact Euclidean AkNN joins on partitioned spatial datasets. Data warehouses commonly partition large tables and store row group statistics for them to accelerate searches and joins, rather than…

Databases · Computer Science 2026-02-11 Dominik Winecki

Balanced search trees are widely used in computer science to efficiently maintain dynamic ordered data. To support efficient set operations (e.g., union, intersection, difference) using trees, the join-based framework is widely studied.…

Data Structures and Algorithms · Computer Science 2025-10-24 Michael Goodrich , Yan Gu , Ryuto Kitagawa , Yihan Sun

Non-point spatial objects (e.g., polygons, linestrings, etc.) are ubiquitous. We study the problem of indexing non-point objects in memory for range queries and spatial intersection joins. We propose a secondary partitioning technique for…

In this paper, we present a contraction-guided adaptive partitioning algorithm for improving interval-valued robust reachable set estimates in a nonlinear feedback loop with a neural network controller and disturbances. Based on an estimate…

Systems and Control · Electrical Eng. & Systems 2024-01-23 Akash Harapanahalli , Saber Jafarpour , Samuel Coogan

Strings are a natural representation of biological data such as DNA, RNA and protein sequences. The problem of finding a string that summarizes a set of sequences has direct application in relative compression algorithms for genome and…

Data Structures and Algorithms · Computer Science 2019-12-06 P. Mirabal , J. Abreu , D. Seco

In the Maximum Duo-Preservation String Mapping problem we are given two strings and wish to map the letters of the former to the letters of the latter so as to maximise the number of duos. A duo is a pair of consecutive letters that is…

Data Structures and Algorithms · Computer Science 2017-05-31 Bartłomiej Dudek , Paweł Gawrychowski , Piotr Ostropolski-Nalewaja

Feature subset selection, as a special case of the general subset selection problem, has been the topic of a considerable number of studies due to the growing importance of data-mining applications. In the feature subset selection problem…

Machine Learning · Computer Science 2014-11-13 Tofigh Naghibi , Sarah Hoffmann , Beat Pfister

Comparing the ranking of candidates by different voters is an important topic in social and information science with a high relevance from the point of view of practical applications. In general, ties and pairs of incomparable candidates…

Applications · Statistics 2016-01-25 Gergely Tibély , Péter Pollner , Gergely Palla

We present OnPair, a dictionary-based compression algorithm designed to meet the needs of in-memory database systems that require both high compression and fast random access. Existing methods either achieve strong compression ratios at…

Databases · Computer Science 2025-08-05 Francesco Gargiulo , Rossano Venturini

This paper proposes a method for identification of a user`s fixed string set (which can be a command/instruction set for a terminal or microprocessor). This method is fast and has very small memory requirements, compared to a traditional…

Human-Computer Interaction · Computer Science 2007-05-23 Dimitrios Skraparlis

We study a new variant of the string matching problem called cross-document string matching, which is the problem of indexing a collection of documents to support an efficient search for a pattern in a selected document, where the pattern…

Data Structures and Algorithms · Computer Science 2012-06-21 Gregory Kucherov , Yakov Nekrich , Tatiana Starikovskaya

A classical measure of string comparison is given by the longest common subsequence (LCS) problem on a pair of strings. We consider its generalisation, called the semi-local LCS problem, which arises naturally in many string-related…

Data Structures and Algorithms · Computer Science 2015-03-13 Alexander Tiskin

This work proposes V-SMART-Join, a scalable MapReduce-based framework for discovering all pairs of similar entities. The V-SMART-Join framework is applicable to sets, multisets, and vectors. V-SMART-Join is motivated by the observed skew in…

Databases · Computer Science 2012-04-30 Ahmed Metwally , Christos Faloutsos

Gene annotation has traditionally required direct comparison of DNA sequences between an unknown gene and a database of known ones using string comparison methods. However, these methods do not provide useful information when a gene does…

Machine Learning · Computer Science 2019-09-17 James K. Senter , Taylor M. Royalty , Andrew D. Steen , Amir Sadovnik

We propose a method to reconstruct and cluster incomplete high-dimensional data lying in a union of low-dimensional subspaces. Exploring the sparse representation model, we jointly estimate the missing data while imposing the intrinsic…

Computer Vision and Pattern Recognition · Computer Science 2017-09-06 João Carvalho , Manuel Marques , João P. Costeira

The Neighbor-Joining algorithm is a popular distance-based phylogenetic method that computes a tree metric from a dissimilarity map arising from biological data. Realizing dissimilarity maps as points in Euclidean space, the algorithm…

Combinatorics · Mathematics 2020-09-18 Ruth Davidson , Abraham Martin del Campo
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