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Python has become the de facto language for scientific computing. Programming in Python is highly productive, mainly due to its rich science-oriented software ecosystem built around the NumPy module. As a result, the demand for Python…

Significant obstacles exist in scientific domains including genetics, climate modeling, and astronomy due to the management, preprocess, and training on complicated data for deep learning. Even while several large-scale solutions offer…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-23 Arup Kumar Sarker , Aymen Alsaadi , Alexander James Halpern , Prabhath Tangella , Mikhail Titov , Niranda Perera , Mills Staylor , Gregor von Laszewski , Shantenu Jha , Geoffrey Fox

We present PyCARL, a PyNN-based common Python programming interface for hardware-software co-simulation of spiking neural network (SNN). Through PyCARL, we make the following two key contributions. First, we provide an interface of PyNN to…

Neural and Evolutionary Computing · Computer Science 2020-05-13 Adarsha Balaji , Prathyusha Adiraju , Hirak J. Kashyap , Anup Das , Jeffrey L. Krichmar , Nikil D. Dutt , Francky Catthoor

MATLAB has emerged as one of the languages most commonly used by scientists and engineers for technical computing, with ~1,000,000 users worldwide. The compute intensive nature of technical computing means that many MATLAB users have codes…

Astrophysics · Physics 2015-05-26 Nadya Bliss , Jeremy Kepner

Seismic data is often sparse and unevenly distributed due to the high costs and logistical challenges associated with deploying physical seismometers, limiting the application of Machine Learning (ML) in earthquake analysis. While…

Machine Learning · Computer Science 2025-04-30 Pascal Tribel , Gianluca Bontempi

We present a Python extension to the massively parallel HPC simulation toolkit waLBerla. waLBerla is a framework for stencil based algorithms operating on block-structured grids, with the main application field being fluid simulations in…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-11-24 Martin Bauer , Florian Schornbaum , Christian Godenschwager , Matthias Markl , Daniela Anderl , Harald Köstler , Ulrich Rüde

The study of research trends is pivotal for understanding scientific development on specific topics. Traditionally, this involves keyword analysis within scholarly literature, yet comprehensive tools for such analysis are scarce, especially…

Digital Libraries · Computer Science 2024-03-28 Zhenyuan Lu , Wei Li , Burcu Ozek , Haozhou Zhou , Srinivasan Radhakrishnan , Sagar Kamarthi

Existing LLM agents for computational materials science are constrained by pipeline-bounded architectures tied to specific simulation codes and by dependence on manually written tool functions that grow with task scope. We present MatClaw,…

Materials Science · Physics 2026-05-25 Chenmu Zhang , Boris I. Yakobson

pPython seeks to provide a parallel capability that provides good speed-up without sacrificing the ease of programming in Python by implementing partitioned global array semantics (PGAS) on top of a simple file-based messaging library…

We describe a parallel, adaptive, multi-block algorithm for explicit integration of time dependent partial differential equations on two-dimensional Cartesian grids. The grid layout we consider consists of a nested hierarchy of fixed size,…

Mathematical Software · Computer Science 2017-03-10 Donna Calhoun , Carsten Burstedde

We introduce SPFlow, an open-source Python library providing a simple interface to inference, learning and manipulation routines for deep and tractable probabilistic models called Sum-Product Networks (SPNs). The library allows one to…

The practical realization of managing and executing large scale scientific computations efficiently and reliably is quite challenging. Scientific computations often involve thousands or even millions of tasks operating on large quantities…

Distributed, Parallel, and Cluster Computing · Computer Science 2008-08-27 Yong Zhao , Ioan Raicu , Ian Foster , Mihael Hategan , Veronika Nefedova , Mike Wilde

PyPWA is a toolkit designed to optimize parametric models describing data and generate simulated distributions according to a model. Its software has been written within the python ecosystem with the goal of performing Amplitude or Partial…

Data Analysis, Statistics and Probability · Physics 2023-06-06 Mark Jones , Peter Hurck , William Phelps , Carlos W. Salgado

There are numerous approaches to building analysis applications across the high-energy physics community. Among them are Python-based, or at least Python-driven, analysis workflows. We aim to ease the adoption of a Python-based analysis…

Computational Physics · Physics 2018-04-25 David Lange

PyMembrane is a software package for simulating liquid and elastic membranes using a discretisation of the continuum description based on unstructured triangulated two-dimensional meshes embedded in three-dimensional space. The package is…

Soft Condensed Matter · Physics 2023-08-25 D. A. Matoz-Fernandez , Siyu Li , Monica Olvera de la Cruz , Rastko Sknepnek

This paper presents the design, implementation, and evaluation of the PyTorch distributed data parallel module. PyTorch is a widely-adopted scientific computing package used in deep learning research and applications. Recent advances in…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-30 Shen Li , Yanli Zhao , Rohan Varma , Omkar Salpekar , Pieter Noordhuis , Teng Li , Adam Paszke , Jeff Smith , Brian Vaughan , Pritam Damania , Soumith Chintala

HYPERTILING is a high-performance Python library for the generation and visualization of regular hyperbolic lattices embedded in the Poincar\'e disk model. Using highly optimized, efficient algorithms, hyperbolic tilings with millions of…

Computational Physics · Physics 2024-06-27 Manuel Schrauth , Yanick Thurn , Florian Goth , Jefferson S. E. Portela , Dietmar Herdt , Felix Dusel

Python is a particularly appealing language to carry out data analysis, owing in part to its user-friendly character as well as its access to well maintained and powerful libraries like NumPy and SciPy. Still, for the purpose of analyzing…

High Energy Physics - Lattice · Physics 2024-02-01 Luis Altenkort , David Anthony Clarke , Jishnu Goswami , Hauke Sandmeyer

Elliptic partial differential equations (PDEs) frequently arise in continuum descriptions of physical processes relevant to science and engineering. Multilevel preconditioners represent a family of scalable techniques for solving discrete…

Mathematical Software · Computer Science 2016-04-26 Dave A. May , Patrick Sanan , Karl Rupp , Matthew G. Knepley , Barry F. Smith

We present SPDL (Scalable and Performant Data Loading), an open-source, framework-agnostic library designed for efficiently loading array data to GPU. Data loading is often a bottleneck in AI applications, and is challenging to optimize…