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In this work, we revisit the fundamental and well-studied problem of approximate pattern matching under edit distance. Given an integer $k$, a pattern $P$ of length $m$, and a text $T$ of length $n \ge m$, the task is to find substrings of…

Data Structures and Algorithms · Computer Science 2021-06-14 Tomasz Kociumaka , Ely Porat , Tatiana Starikovskaya

We present a set of parallel algorithms for computing exact k-nearest neighbors in low dimensions. Many k-nearest neighbor algorithms use either a kd-tree or the Morton ordering of the point set; our algorithms combine these approaches…

Data Structures and Algorithms · Computer Science 2021-11-09 Magdalen Dobson , Guy Blelloch

We propose a theoretically-efficient and practical parallel batch-dynamic data structure for the closest pair problem. Our solution is based on a serial dynamic closest pair data structure by Golin et al., and supports batches of insertions…

Data Structures and Algorithms · Computer Science 2021-03-25 Yiqiu Wang , Shangdi Yu , Yan Gu , Julian Shun

This paper studies the use of kernel density estimation (KDE) for linear algebraic tasks involving the kernel matrix of a collection of $n$ data points in $\mathbb R^d$. In particular, we improve upon existing algorithms for computing the…

Data Structures and Algorithms · Computer Science 2026-03-05 Rikhav Shah , Sandeep Silwal , Haike Xu

Analyzing high-dimensional data with manifold learning algorithms often requires searching for the nearest neighbors of all observations. This presents a computational bottleneck in statistical manifold learning when observations of…

Machine Learning · Computer Science 2022-03-11 Fan Cheng , Anastasios Panagiotelis , Rob J Hyndman

The ability to identify interesting and repetitive substructures is an essential component to discovering knowledge in structural data. We describe a new version of our SUBDUE substructure discovery system based on the minimum description…

Artificial Intelligence · Computer Science 2008-02-03 D. J. Cook , L. B. Holder

We address the problems of measuring geometric similarity between 3D scenes, represented through point clouds or range data frames, and associating them. Our approach leverages macro-scale 3D structural geometry - the relative configuration…

Computer Vision and Pattern Recognition · Computer Science 2018-08-07 Rahul Sawhney , Fuxin Li , Henrik I. Christensen , Charles L. Isbell

Sufficient dimension reduction [J. Amer. Statist. Assoc. 86 (1991) 316-342] has long been a prominent issue in multivariate nonparametric regression analysis. To uncover the central dimension reduction space, we propose in this paper an…

Statistics Theory · Mathematics 2014-08-15 Efang Kong , Yingcun Xia

We give new sublinear and parallel algorithms for the extensively studied problem of approximating n-variable r-CSPs (constraint satisfaction problems with constraints of arity r up to an additive error. The running time of our algorithms…

Data Structures and Algorithms · Computer Science 2014-07-31 Grigory Yaroslavtsev

Given an $n$-bit array $A$, the succinct rank data structure problem asks to construct a data structure using space $n+r$ bits for $r\ll n$, supporting rank queries of form $\mathtt{rank}(x)=\sum_{i=0}^{x-1} A[i]$. In this paper, we design…

Data Structures and Algorithms · Computer Science 2019-04-08 Huacheng Yu

This paper discusses the topic of dimensionality reduction for $k$-means clustering. We prove that any set of $n$ points in $d$ dimensions (rows in a matrix $A \in \RR^{n \times d}$) can be projected into $t = \Omega(k / \eps^2)$…

Artificial Intelligence · Computer Science 2011-05-05 Christos Boutsidis , Anastasios Zouzias , Petros Drineas

Nonparametric density estimation is an unsupervised learning problem. In this work we propose a two-step procedure that casts the density estimation problem in the first step into a supervised regression problem. The advantage is that we…

Statistics Theory · Mathematics 2024-06-04 Thijs Bos , Johannes Schmidt-Hieber

An analysis of high-dimensional data can offer a detailed description of a system but is often challenged by the curse of dimensionality. General dimensionality reduction techniques can alleviate such difficulty by extracting a few…

Methodology · Statistics 2021-09-28 Di Bo , Hoon Hwangbo , Vinit Sharma , Corey Arndt , Stephanie C. TerMaath

In many scientific disciplines structures in high-dimensional data have to be found, e.g., in stellar spectra, in genome data, or in face recognition tasks. In this work we present a novel approach to non-linear dimensionality reduction. It…

Machine Learning · Statistics 2011-09-27 Oliver Kramer

While in many graph mining applications it is crucial to handle a stream of updates efficiently in terms of {\em both} time and space, not much was known about achieving such type of algorithm. In this paper we study this issue for a…

Data Structures and Algorithms · Computer Science 2015-09-23 Sayan Bhattacharya , Monika Henzinger , Danupon Nanongkai , Charalampos E. Tsourakakis

The construction of $r$-nets offers a powerful tool in computational and metric geometry. We focus on high-dimensional spaces and present a new randomized algorithm which efficiently computes approximate $r$-nets with respect to Euclidean…

Computational Geometry · Computer Science 2017-05-09 Georgia Avarikioti , Ioannis Z. Emiris , Loukas Kavouras , Ioannis Psarros

We present a high-dimensional analysis of three popular algorithms, namely, Oja's method, GROUSE and PETRELS, for subspace estimation from streaming and highly incomplete observations. We show that, with proper time scaling, the…

Machine Learning · Computer Science 2019-01-30 Chuang Wang , Yonina C. Eldar , Yue M. Lu

We consider the problem of positioning a cloud of points in the Euclidean space $\mathbb{R}^d$, using noisy measurements of a subset of pairwise distances. This task has applications in various areas, such as sensor network localization and…

Statistics Theory · Mathematics 2012-11-22 Adel Javanmard , Andrea Montanari

We study the classic NP-Hard problem of finding the maximum $k$-set coverage in the data stream model: given a set system of $m$ sets that are subsets of a universe $\{1,\ldots,n \}$, find the $k$ sets that cover the most number of distinct…

Data Structures and Algorithms · Computer Science 2018-05-11 Andrew McGregor , Hoa T. Vu

In the Random Subset Sum Problem, given $n$ i.i.d. random variables $X_1, ..., X_n$, we wish to approximate any point $z \in [-1,1]$ as the sum of a suitable subset $X_{i_1(z)}, ..., X_{i_s(z)}$ of them, up to error $\varepsilon$. Despite…

Neural and Evolutionary Computing · Computer Science 2022-11-18 Luca Becchetti , Arthur Carvalho Walraven da Cunha , Andrea Clementi , Francesco d'Amore , Hicham Lesfari , Emanuele Natale , Luca Trevisan
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