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Dynamic networks are structured interconnections of dynamical systems (modules) driven by external excitation and disturbance signals. In order to identify their dynamical properties and/or their topology consistently from measured data, we…

Systems and Control · Computer Science 2018-04-12 Harm H. M. Weerts , Paul M. J. Van den Hof , Arne G. Dankers

Many complex tasks can be decomposed into simpler, independent parts. Discovering such underlying compositional structure has the potential to enable compositional generalization. Despite progress, our most powerful systems struggle to…

As new instances of nested organization --beyond ecological networks-- are discovered, scholars are debating around the co-existence of two apparently incompatible macroscale architectures: nestedness and modularity. The discussion is far…

Physics and Society · Physics 2018-06-13 Albert Solé-Ribalta , Claudio J. Tessone , Manuel S. Mariani , Javier Borge-Holthoefer

Over the last two decades, network science has greatly advanced our understanding of how the collective behaviors of a complex system emerge from the interactions among its basic units. Multiplex networks, i.e. networks with many layers,…

High-throughput techniques are leading to an explosive growth in the size of biological databases and creating the opportunity to revolutionize our understanding of life and disease. Interpretation of these data remains, however, a major…

Molecular Networks · Quantitative Biology 2009-11-11 Roger Guimera , Luis A. Nunes Amaral

We consider Gallai's graph Modular Decomposition theory for network analytics. On the one hand, by arguing that this is a choice tool for understanding structural and functional similarities among nodes in a network. On the other, by…

Discrete Mathematics · Computer Science 2018-12-04 Carenne Ludena , Miguel mendez , Nicolas Bolivar

Most of the grand challenges of humanity today involve complex agent-based systems, such as epidemiology, economics or ecology. However, remains as a pending task the challenge of identifying the general principles underlying their…

General Finance · Quantitative Finance 2020-10-19 Martin Jaraiz

A standard technique for understanding underlying dependency structures among a set of variables posits a shared conditional probability distribution for the variables measured on individuals within a group. This approach is often referred…

Machine Learning · Statistics 2014-05-13 Elham Azizi , James E. Galagan , Edoardo M. Airoldi

Order can spontaneously emerge from seemingly noisy interactions between biological agents, like a flock of birds changing their direction of flight in unison, without a leader or an external cue. We are interested in the generic conditions…

Biological Physics · Physics 2021-03-09 Carsten T. van de Kamp , George Dadunashvili , Johan L. A. Dubbeldam , Timon Idema

Empirical complex systems can be characterized not only by pairwise interactions, but also by higher-order (group) interactions influencing collective phenomena, from metabolic reactions to epidemics. Nevertheless, higher-order networks'…

Physics and Society · Physics 2026-01-01 Maxime Lucas , Luca Gallo , Arsham Ghavasieh , Federico Battiston , Manlio De Domenico

One of the main tasks of post-genomic informatics is to systematically investigate all molecules and their interactions within a living cell so as to understand how these molecules and the interactions between them relate to the function of…

Molecular Networks · Quantitative Biology 2007-05-23 Jing Zhao , Hong Yu , Jianhua Luo , Z. W. Cao , Yi-Xue Li

Methods for learning Bayesian network structure can discover dependency structure between observed variables, and have been shown to be useful in many applications. However, in domains that involve a large number of variables, the space of…

Machine Learning · Computer Science 2012-12-12 Eran Segal , Dana Pe'er , Aviv Regev , Daphne Koller , Nir Friedman

Discrete models have a long tradition in engineering, including finite state machines, Boolean networks, Petri nets, and agent-based models. Of particular importance is the question of how the model structure constrains its dynamics. This…

Molecular Networks · Quantitative Biology 2011-08-02 Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba

In this paper we develop a theory to describe innovation processes in a network of interacting units. We introduce a stochastic picture that allows for the clarification of the role of fluctuations for the survival of innovations in such a…

Statistical Mechanics · Physics 2007-05-23 Ingrid Hartmann-Sonntag , Andrea Scharnhorst , Werner Ebeling

Many real-world complex networks exhibit a community structure, in which the modules correspond to actual functional units. Identifying these communities is a key challenge for scientists. A common approach is to search for the network…

Physics and Society · Physics 2016-12-22 Federico Botta , Charo I. del Genio

In recent years networks have gained unprecedented attention in studying a broad range of topics, among them in complex systems research. In particular, multi-agent systems have seen an increased recognition of the importance of the…

Physics and Society · Physics 2007-05-23 László Gulyás , Elenna R. Dugundji

Modularity is a key organizing principle in real-world large-scale complex networks. Many real-world networks exhibit modular structures such as transportation infrastructures, communication networks and social media. Having the knowledge…

Physics and Society · Physics 2020-02-26 Eitan Asher , Hillel Sanhedrai , Nagendra K. Panduranga , Reuven Cohen , Shlomo Havlin

Although most networks in nature exhibit complex topology the origins of such complexity remains unclear. We introduce a model of a growing network of interacting agents in which each new agent's membership to the network is determined by…

Disordered Systems and Neural Networks · Physics 2009-09-02 J. I. Perotti , O. V. Billoni , F. A. Tamarit , D. R. Chialvo , S. A. Cannas

Our ability to control complex systems is a fundamental challenge of contemporary science. Recently introduced tools to identify the driver nodes, nodes through which we can achieve full control, predict the existence of multiple control…

We describe a simple adaptive network of coupled chaotic maps. The network reaches a stationary state (frozen topology) for all values of the coupling parameter, although the dynamics of the maps at the nodes of the network can be…

Adaptation and Self-Organizing Systems · Physics 2015-06-19 V. Botella-Soler , P. Glendinning