Related papers: A Minimum Principle in Codon-Anticodon Interaction
Solitons in liquid crystals have generated considerable interest. Several hypotheses of varying complexity have been advanced to explain how they emerge, and a consensus has not emerged yet about the underlying forces responsible for their…
The scope of the paper is to present some aspects of the development of a "macro-element" for dynamic soil-structure interaction analyses of shallow foundations. Initially the concept of "macro-element" is introduced and is illustrated with…
Central to the functioning of a living cell is its ability to control the readout or expression of information encoded in the genome. In many cases, a single transcription factor protein activates or represses the expression of many genes.…
Mixtures of several macromolecular species can lead to the formation of higher-order structures that often display non-ideal mixing behavior. In this work, we propose a minimal model of a quaternary system which considers the formation of a…
We present lower bounds on the minimum pseudocodeword effective Euclidean distance (or minimum "pseudodistance") for coded modulation systems using linear codes with $q$-ary phase-shift keying (PSK) modulation over the additive white…
The weak interaction contribution to the proton neutron mass difference is computed using a generalization of Cottingham's formula. When included in the analysis of the Eotvos experiment, this contribution reduces the bound on a possible…
We theoretically explore the crystal structures of K$_x$picene, for which a new aromatic superconductivity has recently been discovered for $x=3$, by systematically performing first-principles full structural optimization covering the…
Following Poland and Scheraga, we consider a simplified model for the denaturation transition of DNA. The two strands are modeled as interacting polymer chains. The attractive interactions, which mimic the pairing between the four bases,…
Generating protein sequences conditioned on protein structures is an impactful technique for protein engineering. When synthesizing engineered proteins, they are commonly translated into DNA and expressed in an organism such as yeast. One…
One of the central knowledge sources of an information extraction system is a dictionary of linguistic patterns that can be used to identify the conceptual content of a text. This paper describes CRYSTAL, a system which automatically…
This work adopts an information theoretic framework for the design of collusion-resistant coding/decoding schemes for digital fingerprinting. More specifically, the minimum distance decision rule is used to identify 1 out of t pirates.…
The usage frequencies for codons belonging to quartets are analized, over the whole exonic region, for 92 biological species. Correlation is put into evidence, between the usage frequencies of synonymous codons with third nucleotide A and C…
Beyond the genetic code, there is another layer of information encoded as chemical modifications on histone proteins positioned along the DNA. Maintaining these modifications is crucial for survival and identity of cells. How the…
Composition is a powerful principle for systems biology, focused on the interfaces, interconnections, and orchestration of distributed processes to enable integrative multiscale simulations. Whereas traditional models focus on the structure…
Neuronal circuits of the cerebral cortex are the structural basis of mammalian cognition. The same qualitative components and connectivity motifs are repeated across functionally specialized cortical areas and mammalian species, suggesting…
Meson-baryon interactions are the fundamental building blocks to study the structures of baryon resonances and meson properties in few-body nuclear systems. We review the recent progress in the investigation of the meson-baryon interaction…
Our current understanding of the structure of nuclei with up to A=8, including energy spectra, electromagnetic form factors, and weak transitions, is reviewed within the context of a realistic approach to nuclear dynamics based on two- and…
Tunneling of electrons through rotor-stator anthracene aldehyde molecular interfaces is studied with a combined ab initio and model approach. Molecular electronic structure calculated from first principles is utilized to model different…
This paper presents a method for uncovering hidden analytic relationships among the fundamental parameters of the Standard Model (SM), a foundational theory in physics that describes the fundamental particles and their interactions, using…
The interactions between DNA, RNA, and proteins are fundamental to biological processes, as illustrated by the central dogma of molecular biology. Although modern biological pre-trained models have achieved great success in analyzing these…