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We consider the inverse-folding problem for RNA secondary structures: for a given (pseudo-knot-free) secondary structure find a sequence that has that structure as its ground state. If such a sequence exists, the structure is called…

Biological Physics · Physics 2015-06-26 Bernd Burghardt , Alexander K. Hartmann

In this paper, we are interested in minimizing the sum of block sizes in a pairwise balanced design, where there are some constraints on the size of one block or the size of the largest block. For every positive integers n;m, where m ? n,…

Combinatorics · Mathematics 2014-11-04 Akbar Davoodi , Ramin Javadi , Behnaz Omoomi

Let $\mathfrak A$ be an alphabet and $W$ be a set of words in the free monoid ${\mathfrak A}^*$. Let $S(W)$ denote the Rees quotient over the ideal of ${\mathfrak A}^*$ consisting of all words that are not subwords of words in $W$. A set of…

Group Theory · Mathematics 2020-03-25 Olga Sapir

We show that the structured singular value of a real matrix with respect to five full complex uncertainty blocks equals its convex upper bound. This is done by formulating the equality conditions as a feasibility SDP and invoking a result…

Optimization and Control · Mathematics 2020-07-14 Olof Troeng

We describe methods for proving bounds on infinite-time averages in differential dynamical systems. The methods rely on the construction of nonnegative polynomials with certain properties, similarly to the way nonlinear stability can be…

Dynamical Systems · Mathematics 2021-06-25 David Goluskin

Let 1_k 0_l denote the (k+l)\times 1 column of k 1's above l 0's. Let q. (1_k 0_l) $ denote the (k+l)xq matrix with q copies of the column 1_k0_l. A 2-design S_{\lambda}(2,3,v) can be defined as a vx(\lambda/3)\binom{v}{2} (0,1)-matrix with…

Combinatorics · Mathematics 2019-09-18 R. P. Anstee , Farzin Barekat

The field of fine-grained complexity aims at proving conditional lower bounds on the time complexity of computational problems. One of the most popular assumptions, Strong Exponential Time Hypothesis (SETH), implies that SAT cannot be…

Computational Complexity · Computer Science 2023-07-24 Tatiana Belova , Alexander S. Kulikov , Ivan Mihajlin , Olga Ratseeva , Grigory Reznikov , Denil Sharipov

As a consequence of the classification of the finite simple groups, it has been possible in recent years to characterize Steiner t-designs, that is t-(v,k,1) designs, mainly for t = 2, admitting groups of automorphisms with sufficiently…

Combinatorics · Mathematics 2018-07-03 Michael Huber

Balanced incomplete block designs (BIBDs) are a class of designs with v treatments and b blocks of size k that are optimal with regards to a wide range of optimality criteria, but it is not clear which designs to choose for combinations of…

Statistics Theory · Mathematics 2019-02-13 Sera Aylin Cakiroglu , Peter J Cameron

A spherical $t$-design is a finite subset $X$ of the unit sphere such that every polynomial of degree at most $t$ has the same average over $X$ as it does over the entire sphere. Determining the minimum possible size of spherical designs,…

Statistics Theory · Mathematics 2026-01-13 Travis Dillon

This is the first paper that provides a systematic treatment of the $r$-dimensional PTE problem in additive number theory, abbreviated by PTE$_r$, through its connection with combinatorial design theory, the branch of combinatorial…

Combinatorics · Mathematics 2026-03-20 Munenori Inagaki , Hideki Matsumura , Masanori Sawa , Yukihiro Uchida

Let $P$ be a finite set of points in the plane in general position, that is, no three points of $P$ are on a common line. We say that a set $H$ of five points from $P$ is a $5$-hole in $P$ if $H$ is the vertex set of a convex $5$-gon…

A Ryser design $\mathcal{D}$ on $v$ points is a collection of $v$ proper subsets (called blocks) of a point-set with $v$ points satisfying (i) every two blocks intersect each other in $\lambda$ points for a fixed $\lambda < v$ (ii) there…

Combinatorics · Mathematics 2019-09-16 Tushar D. Parulekar , Sharad S. Sane

Twin-width is a recently introduced graph parameter with applications in algorithmics, combinatorics, and finite model theory. For graphs of bounded degree, finiteness of twin-width is preserved by quasi-isometry. Thus, through Cayley…

Group Theory · Mathematics 2022-07-18 Édouard Bonnet , Colin Geniet , Romain Tessera , Stéphan Thomassé

To compute solutions of sparse polynomial systems efficiently we have to exploit the structure of their Newton polytopes. While the application of polyhedral methods naturally excludes solutions with zero components, an irreducible…

Symbolic Computation · Computer Science 2014-05-05 Danko Adrovic , Jan Verschelde

This paper studies lower bounds for fundamental optimization problems in the CONGEST model. We show that solving problems exactly in this model can be a hard task, by providing $\tilde{\Omega}(n^2)$ lower bounds for cornerstone problems,…

Data Structures and Algorithms · Computer Science 2019-05-27 Nir Bachrach , Keren Censor-Hillel , Michal Dory , Yuval Efron , Dean Leitersdorf , Ami Paz

The blocking number of a manifold is the minimal number of points needed to block out lights between any two given points in the manifold. It has been conjectured that if the blocking number of a manifold is finite, then the manifold must…

Differential Geometry · Mathematics 2008-08-27 Wing Kai Ho

Deciding the amalgamation property for a given class of finite structures is an important subroutine in classifying countable finitely homogeneous structures. We study the computational complexity of the amalgamation decision problem for…

Logic in Computer Science · Computer Science 2025-09-03 Jakub Rydval

Tight triangulations are exotic, but highly regular objects in combinatorial topology. A triangulation is tight if all its piecewise linear embeddings into a Euclidean space are as convex as allowed by the topology of the underlying…

Geometric Topology · Mathematics 2018-10-24 Benjamin A. Burton , Basudeb Datta , Nitin Singh , Jonathan Spreer

We consider $2$-designs which admit a group of automorphisms that is flag-transitive and leaves invariant a chain of nontrivial point-partitions. We build on our recent work on $2$-designs which are block-transitive but not necessarily…

Combinatorics · Mathematics 2024-01-26 Carmen Amarra , Alice Devillers , Cheryl E. Praeger