Related papers: Pattern Avoidance in Ternary Trees

Frequent tree mining asks us to enumerate tree patterns that occur frequently in a database of rooted trees. This problem is motivated by tree-structured data in bioinformatics, such as glycans and pseudoknot-free RNA secondary structures.…

This paper introduces a series of methods for traversing binary decision trees using arithmetic operations. We present a suite of binary tree traversal algorithms that leverage novel representation matrices to flatten the full binary tree…

We consider uniform random permutations drawn from a family enumerated through generating trees. We develop a new general technique to establish a central limit theorem for the number of consecutive occurrences of a fixed pattern in such…

We study the enumeration of spinal tree-child phylogenetic networks, a rigid family of tree-child networks in which all internal vertices lie on a single root--to--leaf path. We provide two complementary combinatorial frameworks. First, we…

There are several versions of permutation pattern avoidance that have arisen in the literature, and some known examples of two different types of pattern avoidance coinciding. In this paper, we examine barred patterns and vincular patterns.…

Tree-child networks are one of the most prominent network classes for modeling evolutionary processes which contain reticulation events. Several recent studies have addressed counting questions for {\it bicombining tree-child networks}…

Processing sentence constituency trees in binarised form is a common and popular approach in literature. However, constituency trees are non-binary by nature. The binarisation procedure changes deeply the structure, furthering constituents…

We consider the problem of enumerating permutations with exactly r occurrences of the pattern 1324 and derive functional equations for this general case as well as for the pattern avoidance (r=0) case. The functional equations lead to a new…

Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…

Classical pattern avoidance and occurrence are well studied in the symmetric group $\mathcal{S}_{n}$. In this paper, we provide explicit recurrence relations to the generating functions counting the number of classical pattern occurrence in…

This paper proves that two differently defined rooted binary trees are isomorphic. The first tree is one associated to a version of Farey sequences where the vertices correspond to the open intervals formed by two successive terms in the…

With XML becoming an ubiquitous language for data interoperability purposes in various domains, efficiently querying XML data is a critical issue. This has lead to the design of algebraic frameworks based on tree-shaped patterns akin to the…

We introduce and study a notion of decomposition of planar point sets (or rather of their chirotopes) as trees decorated by smaller chirotopes. This decomposition is based on the concept of mutually avoiding sets (which we rephrase as…

Most of major algorithms for phylogenetic tree reconstruction assume that sequences in the analyzed set either do not have any offspring, or that parent sequences can maximally mutate into just two descendants. The graph resulting from such…

Recently, it has been determined that there are 242 Wilf classes of triples of 4-letter permutation patterns by showing that there are 32 non-singleton Wilf classes. Moreover, the generating function for each triple lying in a non-singleton…

Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…

The method we have applied in "A. Bernini, L. Ferrari, R. Pinzani, Enumerating permutations avoiding three Babson-Steingrimsson patterns, Ann. Comb. 9 (2005), 137--162" to count pattern avoiding permutations is adapted to words. As an…

This paper investigates pattern avoidance in linear extensions of a certain class of partially ordered set. Since the question of enumerating pattern avoiding linear extensions of posets in general is a very hard one, we focus instead on…

We introduce the zip tree, a form of randomized binary search tree that integrates previous ideas into one practical, performant, and pleasant-to-implement package. A zip tree is a binary search tree in which each node has a numeric rank…

A fringe subtree of a rooted tree is a subtree induced by one of the vertices and all its descendants. We consider the problem of estimating the number of distinct fringe subtrees in two types of random trees: simply generated trees and…