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In the genomic era, the identification of gene signatures associated with disease is of significant interest. Such signatures are often used to predict clinical outcomes in new patients and aid clinical decision-making. However, recent…

Methodology · Statistics 2019-03-27 Naim U. Rashid , Quefeng Li , Jen Jen Yeh , Joseph G. Ibrahim

Cancer Biotherapy (CB), as opposed to cancer chemotherapy, is the use of macromolecular, biological agents instead of organic chemicals or drugs to treat cancer. Biological agents usually have higher selectivity and have less toxic side…

Biomolecules · Quantitative Biology 2016-02-29 Preety Priya , Vicente M. Reyes

Motivation: Analysis of relationships of drug structure to biological response is key to understanding off-target and unexpected drug effects, and for developing hypotheses on how to tailor drug thera-pies. New methods are required for…

Machine Learning · Statistics 2014-04-30 Suleiman A Khan , Seppo Virtanen , Olli P Kallioniemi , Krister Wennerberg , Antti Poso , Samuel Kaski

In the context of multistability driven diseases, like cancer, spatiotemporal plasticity plays a significant role to achieve a spectrum of phenotypic variations. The interplay between gene regulatory networks and environmental factors, such…

Populations and Evolution · Quantitative Biology 2026-02-17 Ranu Kundu , Priya Chakraborty , Sohini Guin , Shyam Sundar Poriah , Sayantari Ghosh

In this paper, we propose a tumor growth model to incorporate and investigate the spatial effects of autophagy. The cells are classified into two phases: normal cells and autophagic cells, whose dynamics are also coupled with the nutrients.…

Analysis of PDEs · Mathematics 2021-08-31 Xu'an Dou , Jian-Guo Liu , Zhennan Zhou

Molecular chaperones play a prominent role in signaling and transcriptional regulatory networks of the cell. Recent advances uncovered that chaperones act as genetic buffers stabilizing the phenotype of various cells and organisms and may…

Molecular Networks · Quantitative Biology 2007-05-23 Tamas Korcsmaros , Istvan A. Kovacs , Mate S. Szalay , Peter Csermely

We present an applied study in cancer genomics for integrating data and inferences from laboratory experiments on cancer cell lines with observational data obtained from human breast cancer studies. The biological focus is on improving…

Applications · Statistics 2010-10-07 Daniel Merl , Julia Ling-Yu Chen , Jen-Tsan Chi , Mike West

We report on short ballistic (SB) Josephson coupling in junctions embedded in a planar heterostructure of graphene. Ballistic Josephson coupling is confirmed by the Fabry-Perot-type interference of the junction critical current $I_c$. An…

Mesoscale and Nanoscale Physics · Physics 2018-02-21 Jinho Park , Jae Hyeong Lee , Gil-Ho Lee , Yositake Takane , Ken-Ichiro Imura , Takashi Taniguchi , Kenji Watanabe , Hu-Jong Lee

Cancer cells utilize large amounts of ATP to sustain growth, relying primarily on non-oxidative, fermentative pathways for its production. In many types of cancers this leads, even in the presence of oxygen, to the secretion of carbon…

Molecular Networks · Quantitative Biology 2015-07-09 Fabrizio Capuani , Daniele De Martino , Enzo Marinari , Andrea De Martino

Cells, other than their biological properties, have different electric and physical properties. In an impedance cytometer, cells should pass one by one in the detection region where pairs of electrodes are located. When cells are located…

Signal Processing · Electrical Eng. & Systems 2022-03-09 Hassan Raji , Iraj Dehghan Hamani

Tumor growth, which plays a central role in cancer evolution, depends on both the internal features of the cells, such as their ability for unlimited duplication, and the external conditions, e.g., supply of nutrients, as well as the…

Biological Physics · Physics 2018-06-19 Youness Azimzade , Abbas Ali Saberi , Muhammad Sahimi

Tumor development is characterized by a compromised balance between cell life and death decision mechanisms, which are tighly regulated in normal cells. Understanding this process provides insights for developing new treatments for fighting…

Molecular Networks · Quantitative Biology 2013-01-14 Andrei Zinovyev , Simon Fourquet , Laurent Tournier , Laurence Calzone , Emmanuel Barillot

In the study of cancer evolution and therapeutic strategies, scientific evidence shows that a key dynamics lies in the tumor-environment interaction. In particular, oxygen concentration plays a central role in the determination of the…

Populations and Evolution · Quantitative Biology 2023-07-20 Giulia Chiari , Giada Fiandaca , Marcello Edoardo Delitala

Although some pollutants emitted in vehicle exhaust, such as benzene, are known to cause leukemia in adults with high exposure levels, less is known about the relationship between traffic-related air pollution (TRAP) and childhood…

Applications · Statistics 2024-05-16 Sofia L. Vega , Rachel C. Nethery

Contact inhibition is the process by which cells switch from a motile growing state to a passive and stabilized state upon touching their neighbors. When two cells touch, an adhesion link is created between them by means of transmembrane…

Biological Physics · Physics 2015-05-15 Markus Basan , Timon Idema , Martin Lenz , Jean-François Joanny , Thomas Risler

A growing body of work suggests that planar Josephson junctions fabricated using superconducting hybrid materials provide a highly controllable route toward one-dimensional topological superconductivity. Among the experimental controls are…

Chronic Myeloid Leukaemia (CML) is a blood-derived proliferative disorder, which is highly associated to a translocation of chromosomes 9 and 22 or the creation of Philadelphia chromosome Ph(+) cases, inducing the synthesis of a chimeric…

Cell Behavior · Quantitative Biology 2020-02-25 A. Vivanco-Lira

Interactive visualization tools are highly desirable to biologist and cancer researchers to explore the complex structures, detect patterns and find out the relationships among bio-molecules responsible for a cancer type. A pathway contains…

Quantitative Methods · Quantitative Biology 2017-10-23 Vinh Nguyen , Md Yasin Kabir , Tommy Dang

Breast cancer (BC) remains a significant global health challenge, with personalized treatment selection complicated by the disease's molecular and clinical heterogeneity. BC treatment decisions rely on various patient-specific clinical…

Applications · Statistics 2025-07-10 Md Nahid Hasan , Md Monzur Murshed , Md Mahadi Hasan , Faysal A. Chowdhury

Graphene is an innovative nanomaterial, made of two-dimensional honeycomb-like carbon lattice, with potential in many different applications. Studying the behaviour of graphene-related materials (GRMs) in biological systems is, therefore,…