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Geometry of networks endowed with a causal structure is discussed using the conventional framework of equilibrium statistical mechanics. The popular growing network models appear as particular causal models. We focus on a class of tree…

Statistical Mechanics · Physics 2009-11-07 P. Bialas , Z. Burda , J. Jurkiewicz , A. Krzywicki

Complex networks are relational data sets commonly represented as graphs. The analysis of their intricate structure is relevant to many areas of science and commerce, and data sets may reach sizes that require distributed storage and…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-05 Jannis Koch , Christian L. Staudt , Maximilian Vogel , Henning Meyerhenke

We apply an information theoretic treatment of action potential time series measured with microelectrode arrays to estimate the connectivity of mammalian neuronal cell assemblies grown {\it in vitro}. We infer connectivity between two…

Neurons and Cognition · Quantitative Biology 2007-05-23 Luis M. A. Bettencourt , Greg J. Stephens , Michael I. Ham , Guenter W. Gross

The rapid evolution of network services demands new paradigms for studying and designing networks. In order to understand the underlying mechanisms that provide network functions, we propose a framework which enables the functional analysis…

Social and Information Networks · Computer Science 2017-10-09 Merim Dzaferagic , Nicholas Kaminski , Neal McBride , Irene Macaluso , Nicola Marchetti

Node-link diagrams are widely used to visualise networks. However, even the best network layout algorithms ultimately result in 'hairball' visualisations when the graph reaches a certain degree of complexity, requiring simplification…

Human-Computer Interaction · Computer Science 2021-03-25 Vahan Yoghourdjian , Yalong Yang , Tim Dwyer , Lee Lawrence , Michael Wybrow , Kim Marriott

To better understand the overlapping modular organization of large networks with respect to flow, here we introduce the map equation for overlapping modules. In this information-theoretic framework, we use the correspondence between…

Physics and Society · Physics 2012-02-03 Alcides Viamontes Esquivel , Martin Rosvall

This paper represents a contribution to the study of the brain functional connectivity from the perspective of complex networks theory. More specifically, we apply graph theoretical analyses to provide evidence of the modular structure of…

Neurons and Cognition · Quantitative Biology 2016-09-06 Giampiero Bardella , Angelo Bifone , Andrea Gabrielli , Alessandro Gozzi , Tiziano Squartini

This paper describes how realistic neuromorphic networks can have their connectivity properties fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the…

Disordered Systems and Neural Networks · Physics 2009-11-10 Luciano da F. Costa

Much of our understanding of complex structures is based on simplification: for example, metal-organic frameworks are often discussed in the context of "nodes" and "linkers", allowing for a qualitative comparison with simpler inorganic…

Materials Science · Physics 2020-05-21 Thomas C. Nicholas , Andrew L. Goodwin , Volker L. Deringer

The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

Statistical Mechanics · Physics 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Phylogenetic networks are used to represent the evolutionary history of species. Recently, the new class of orchard networks was introduced, which were later shown to be interpretable as trees with additional horizontal arcs. This makes the…

Combinatorics · Mathematics 2023-05-09 Leo van Iersel , Mark Jones , Esther Julien , Yukihiro Murakami

Graph drawings are useful tools for exploring the structure and dynamics of data that can be represented by pair-wise relationships among a set of objects. Typical real-world social, biological or technological networks exhibit high…

Social and Information Networks · Computer Science 2018-07-05 Christian Schulz

We review the main tools which allow for the statistical characterization of weighted networks. We then present two case studies, the airline connection network and the scientific collaboration network, which are representative of critical…

Statistical Mechanics · Physics 2009-11-10 Marc Barthelemy , Alain Barrat , Romualdo Pastor-Satorras , Alessandro Vespignani

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

Neurons and Cognition · Quantitative Biology 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

In this paper we find an exact analytical expression for the number of spanning trees in Apollonian networks. This parameter can be related to significant topological and dynamic properties of the networks, including percolation, epidemic…

Combinatorics · Mathematics 2014-01-21 Zhongzhi Zhang , Bin Wu , Francesc Comellas

Network science enables the effective analysis of real interconnected systems, characterized by a complex interplay between topology and interconnections strength. It is well-known that the topology of a network affects its resilience to…

Physics and Society · Physics 2021-06-10 Giulia Bertagnolli , Riccardo Gallotti , Manlio De Domenico

Network flow is a powerful mathematical framework to systematically explore the relationship between structure and function in biological, social, and technological networks. We introduce a new pipelining model of flow through networks…

Neural and Evolutionary Computing · Computer Science 2019-11-04 Lavanya Marla , Lav R. Varshney , Devavrat Shah , Nirmal A. Prakash , Michael E. Gale

The entities in directed networks arising from real-world interactions are often naturally organized under some hierarchical structure. Given a directed, weighted, graph with edges and node labels, we introduce ranking problem where the…

Data Structures and Algorithms · Computer Science 2025-02-04 Chamalee Wickrama Arachchi , Nikolaj Tatti

Many networks in nature, society and technology are characterized by a mesoscopic level of organization, with groups of nodes forming tightly connected units, called communities or modules, that are only weakly linked to each other.…

Physics and Society · Physics 2009-03-11 Andrea Lancichinetti , Santo Fortunato , Janos Kertesz

The network topology can be described by the number of nodes and the interconnections among them. The degree of a node in a network is the number of connections it has to other nodes and the degree distribution is the probability…

Physics and Society · Physics 2014-09-19 Bin Zhou , Bing-Hong Wang , He Zhe
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