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Understanding genetic variation, e.g., through mutations, in organisms is crucial to unravel their effects on the environment and human health. A fundamental characterization can be obtained by solving the haplotype assembly problem, which…

Genomics · Quantitative Biology 2022-10-25 Hansheng Xue , Vaibhav Rajan , Yu Lin

We present a novel graph embedding space (i.e., a set of measures on graphs) for performing statistical analyses of networks. Key improvements over existing approaches include discovery of "motif-hubs" (multiple overlapping significant…

Disordered Systems and Neural Networks · Physics 2007-05-23 Etay Ziv , Robin Koytcheff , Manuel Middendorf , Chris Wiggins

With the wide-spread availability of complex relational data, semi-supervised node classification in graphs has become a central machine learning problem. Graph neural networks are a recent class of easy-to-train and accurate methods for…

Machine Learning · Computer Science 2021-06-08 Junteng Jia , Cenk Baykal , Vamsi K. Potluru , Austin R. Benson

Federated Learning is machine learning in the context of a network of clients whilst maintaining data residency and/or privacy constraints. Community detection is the unsupervised discovery of clusters of nodes within graph-structured data.…

Machine Learning · Computer Science 2023-12-15 William Leeney , Ryan McConville

Graph clustering, an important unsupervised problem, has been shown to be more resistant to advances in Graph Neural Networks (GNNs). In addition, almost all clustering methods focus on homophilic graphs and ignore heterophily. This…

Machine Learning · Computer Science 2026-03-11 Xuanting Xie , Erlin Pan , Zhao Kang , Wenyu Chen , Bingheng Li

(Hyper)Graph decomposition is a family of problems that aim to break down large (hyper)graphs into smaller sub(hyper)graphs for easier analysis. The importance of this lies in its ability to enable efficient computation on large and complex…

Data Structures and Algorithms · Computer Science 2023-08-31 Marcelo Fonseca Faraj

Correlation clustering seeks a partition of the vertex set of a given graph/network into groups of closely related, or just close enough, vertices so that elements of different groups are not close to each other. The problem has been…

Social and Information Networks · Computer Science 2024-12-05 Faisal N. Abu-Khzam , Lucas Isenmann , Sergio Thoumi

Revealing relationships between genes and disease phenotypes is a critical problem in biomedical studies. This problem has been challenged by the heterogeneity of diseases. Patients of a perceived same disease may form multiple subgroups,…

Methodology · Statistics 2022-11-30 Yifan Sun , Ziye Luo , Xinyan Fan

Many real-world networks exhibit correlations between the node degrees. For instance, in social networks nodes tend to connect to nodes of similar degree. Conversely, in biological and technological networks, high-degree nodes tend to be…

Discrete Mathematics · Computer Science 2015-09-30 Kevin E. Bassler , Charo I. Del Genio , Péter L. Erdős , István Miklós , Zoltán Toroczkai

Spectral clustering (SC) and graph-based semi-supervised learning (SSL) algorithms are sensitive to how graphs are constructed from data. In particular if the data has proximal and unbalanced clusters these algorithms can lead to poor…

Machine Learning · Statistics 2013-02-22 Jing Qian , Venkatesh Saligrama

An uncertain graph $\mathcal{G} = (V, E, p : E \rightarrow (0,1])$ can be viewed as a probability space whose outcomes (referred to as \emph{possible worlds}) are subgraphs of $\mathcal{G}$ where any edge $e\in E$ occurs with probability…

Data Structures and Algorithms · Computer Science 2017-10-17 Matteo Ceccarello , Carlo Fantozzi , Andrea Pietracaprina , Geppino Pucci , Fabio Vandin

Hypergraphs provide a powerful framework for modeling complex systems and networks with higher-order interactions beyond simple pairwise relationships. However, graph-based clustering approaches, which focus primarily on pairwise relations,…

Social and Information Networks · Computer Science 2025-07-16 Giuseppe F. Italiano , Athanasios L. Konstantinidis , Anna Mpanti , Fariba Ranjbar

Neural networks achieve strong empirical performance, but robustness concerns still hinder deployment in safety-critical applications. Formal verification provides robustness guarantees, but current methods face a scalability-completeness…

Machine Learning · Computer Science 2026-02-06 Wenting Li , Saif R. Kazi , Russell Bent , Duo Zhou , Huan Zhang

Neural networks are increasingly used for graph classification in a variety of contexts. Social media is a critical application area in this space, however the characteristics of social media graphs differ from those seen in most popular…

Machine Learning · Computer Science 2021-01-01 Thomas Magelinski , David Beskow , Kathleen M. Carley

Variable selection on the large-scale networks has been extensively studied in the literature. While most of the existing methods are limited to the local functionals especially the graph edges, this paper focuses on selecting the discrete…

Methodology · Statistics 2023-09-18 Lu Zhang , Junwei Lu

With the rapid adoption of machine learning techniques for large-scale applications in science and engineering comes the convergence of two grand challenges in visualization. First, the utilization of black box models (e.g., deep neural…

Robust network design refers to a class of optimization problems that occur when designing networks to efficiently handle variable demands. The notion of "hierarchical hubbing" was introduced (in the narrow context of a specific robust…

Data Structures and Algorithms · Computer Science 2014-07-01 Neil Olver

Degree correlation is an important topological property common to many real-world networks. In this paper, the statistical measures for characterizing the degree correlation in networks are investigated analytically. We give an exact proof…

Physics and Society · Physics 2015-09-03 Ju Xiang , Ke Hu , Tao Hu , Yan Zhang , Jian-Ming Li

Information networks are becoming increasingly popular to capture complex relationships across various disciplines, such as social networks, citation networks, and biological networks. The primary challenge in this domain is measuring…

Algebraic Topology · Mathematics 2019-07-23 Mehmet Emin Aktas , Esra Akbas , Ahmed El Fatmaoui

The aim of this paper is to rigorously study dynamics of Heterogeneously Coupled Maps (HCM). Such systems are determined by a network with heterogeneous degrees. Some nodes, called hubs, are very well connected while most nodes interact…

Dynamical Systems · Mathematics 2017-12-20 Tiago Pereira , Sebastian van Strien , Matteo Tanzi
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