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Traditional clustering algorithms often struggle to capture the complex relationships within graphs and generalise to arbitrary clustering criteria. The emergence of graph neural networks (GNNs) as a powerful framework for learning…

Biological Physics · Physics 2024-09-06 Sam Alexander Martino , João Morado , Chenghao Li , Zhenghao Lu , Edina Rosta

We consider the problem of devising algorithms to count exactly the number of independent sets of a graph G . We show that there is a polynomial time algorithm for this problem when G is restricted to the class of strongly orderable graphs,…

Discrete Mathematics · Computer Science 2021-01-07 Marc Heinrich , Haiko Müller

We address the problem of sampling colorings of a graph $G$ by Markov chain simulation. For most of the article we restrict attention to proper $q$-colorings of a path on $n$ vertices (in statistical physics terms, the one-dimensional…

Probability · Mathematics 2007-05-23 Martin Dyer , Leslie Ann Goldberg , Mark Jerrum

A $k$-height on a graph $G=(V, E)$ is an assignment $V\to\{0, \ldots, k\}$ such that the value on ajacent vertices differs by at most $1$. We study the Markov chain on $k$-heights that in each step selects a vertex at random, and, if…

Discrete Mathematics · Computer Science 2024-10-14 Stefan Felsner , Daniel Heldt , Sandro Roch , Peter Winkler

Posterior sampling is a task of central importance in Bayesian inference. For many applications in Bayesian meta-analysis and Bayesian transfer learning, the prior distribution is unknown and needs to be estimated from samples. In practice,…

Computation · Statistics 2024-08-06 Chenyang Zhong , Shouxuan Ji , Tian Zheng

Understanding the local structure of a graph provides valuable insights about the underlying phenomena from which the graph has originated. Sampling and examining k-subgraphs is a widely used approach to understand the local structure of a…

Data Structures and Algorithms · Computer Science 2020-01-28 Ryuta Matsuno , Aristides Gionis

We consider discrete-time Markov chains and study large deviations of the pair empirical occupation measure, which is useful to compute fluctuations of pure-additive and jump-type observables. We provide an exact expression for the…

Statistical Mechanics · Physics 2022-07-04 Giorgio Carugno , Pierpaolo Vivo , Francesco Coghi

Given a set of snapshots from a temporal network we develop, analyze, and experimentally validate a so-called network interpolation scheme. Our method allows us to build a plausible, albeit random, sequence of graphs that transition between…

Social and Information Networks · Computer Science 2021-02-22 Thomas Reeves , Anil Damle , Austin R. Benson

The Gibbs sampler is a particularly popular Markov chain used for learning and inference problems in Graphical Models (GMs). These tasks are computationally intractable in general, and the Gibbs sampler often suffers from slow mixing. In…

Machine Learning · Computer Science 2017-04-10 Sejun Park , Yunhun Jang , Andreas Galanis , Jinwoo Shin , Daniel Stefankovic , Eric Vigoda

We study Markov chains for $\alpha$-orientations of plane graphs, these are orientations where the outdegree of each vertex is prescribed by the value of a given function $\alpha$. The set of $\alpha$-orientations of a plane graph has a…

Combinatorics · Mathematics 2023-06-22 Stefan Felsner , Daniel Heldt

We propose a fast approximate algorithm for large graph matching. A new projected fixed-point method is defined and a new doubly stochastic projection is adopted to derive the algorithm. Previous graph matching algorithms suffer from high…

Computer Vision and Pattern Recognition · Computer Science 2012-08-13 Yao Lu , Kaizhu Huang , Cheng-Lin Liu

Markov chains for probability distributions related to matrix product states and 1D Hamiltonians are introduced. With appropriate 'inverse temperature' schedules, these chains can be combined into a random approximation scheme for ground…

Strongly Correlated Electrons · Physics 2014-05-14 S. Iblisdir

We propose an improved algorithm for counting the number of Hamiltonian cycles in a directed graph. The basic idea of the method is sequential acceptance/rejection, which is successfully used in approximating the number of perfect matchings…

Data Structures and Algorithms · Computer Science 2009-11-23 Jinshan Zhang

The approximate uniform sampling of graphs with a given degree sequence is a well-known, extensively studied problem in theoretical computer science and has significant applications, e.g., in the analysis of social networks. In this work we…

Discrete Mathematics · Computer Science 2023-01-05 Georgios Amanatidis , Pieter Kleer

In this work we present a simple and efficient algorithm which, with high probability, provides an almost uniform sample from the set of proper k-colourings on an instance of a sparse random graph G(n,d/n), where k=k(d) is a sufficiently…

Discrete Mathematics · Computer Science 2008-06-26 Charilaos Efthymiou , Paul G. Spirakis

In this article we consider certain well-known polynomials associated with graphs including the independence polynomial and the chromatic polynomial. These polynomials count certain objects in graphs: independent sets in the case of the…

Data Structures and Algorithms · Computer Science 2022-12-19 Viresh Patel , Guus Regts

Inferring graph structure from observations on the nodes is an important and popular network science task. Departing from the more common inference of a single graph and motivated by social and biological networks, we study the problem of…

Machine Learning · Statistics 2020-10-19 Madeline Navarro , Yuhao Wang , Antonio G. Marques , Caroline Uhler , Santiago Segarra

Markov chain Monte Carlo is an inherently serial algorithm. Although likelihood calculations for individual steps can sometimes be parallelized, the serial evolution of the process is widely viewed as incompatible with parallelization,…

Computation · Statistics 2013-12-31 Douglas N. VanDerwerken , Scott C. Schmidler

We propose a very fast approximate Markov Chain Monte Carlo (MCMC) sampling framework that is applicable to a large class of sparse Bayesian inference problems, where the computational cost per iteration in several models is of order…

Computation · Statistics 2021-08-17 Yves Atchadé , Liwei Wang

A 2-packing set for an undirected graph $G=(V,E)$ is a subset $\mathcal{S} \subset V$ such that any two vertices $v_1,v_2 \in \mathcal{S}$ have no common neighbors. Finding a 2-packing set of maximum cardinality is a NP-hard problem. We…

Data Structures and Algorithms · Computer Science 2024-02-13 Jannick Borowitz , Ernestine Großmann , Christian Schulz , Dominik Schweisgut
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