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This paper presents a study on data dissemination in unstructured Peer-to-Peer (P2P) network overlays. The absence of a structure in unstructured overlays eases the network management, at the cost of non-optimal mechanisms to spread…

Networking and Internet Architecture · Computer Science 2016-09-27 Gabriele D'Angelo , Stefano Ferretti

Arrival of multicore systems has enforced a new scenario in computing, the parallel and distributed algorithms are fast replacing the older sequential algorithms, with many challenges of these techniques. The distributed algorithms provide…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-13 Rajendra Purohit , K R Chowdhary , S D Purohit

We measured the impact of long-range exponentially decaying intra-areal lateral connectivity on the scaling and memory occupation of a distributed spiking neural network simulator compared to that of short-range Gaussian decays. While…

We study the dynamics of parallel tempering simulations, also known as the replica exchange technique, which has become the method of choice for simulation of proteins and other complex systems. Recent results for the optimal choice of the…

Statistical Mechanics · Physics 2009-11-13 Walter Nadler , Ulrich H. E. Hansmann

We consider the problem of developing an efficient multi-threaded implementation of the matrix-vector multiplication algorithm for sparse matrices with structural symmetry. Matrices are stored using the compressed sparse row-column format…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-18 Vicente H. F. Batista , George O. Ainsworth , Fernando L. B. Ribeiro

In this paper, we consider the problem of clustering graph nodes and sparsifying graph edges over distributed graphs, when graph edges with possibly edge duplicates are observed at physically remote sites. Although edge duplicates across…

Data Structures and Algorithms · Computer Science 2023-02-21 Chun Jiang Zhu

Artificial intelligence workloads, especially transformer models, exhibit emergent sparsity in which computations perform selective sparse access to dense data. The workloads are inefficient on hardware designed for dense computations and…

Data Structures and Algorithms · Computer Science 2024-02-23 Brian Wheatman , Meghana Madhyastha , Randal Burns

The design of a parallel computing system using several thousands or even up to a million processors asks for processing units that are simple and thus small in space, to make as many processing units as possible fit on a single die. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-21 Oskar Schirmer

This paper presents the design, implementation, and evaluation of the PyTorch distributed data parallel module. PyTorch is a widely-adopted scientific computing package used in deep learning research and applications. Recent advances in…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-30 Shen Li , Yanli Zhao , Rohan Varma , Omkar Salpekar , Pieter Noordhuis , Teng Li , Adam Paszke , Jeff Smith , Brian Vaughan , Pritam Damania , Soumith Chintala

Scaling Deep Neural Networks (DNNs) requires significant computational resources in terms of GPU quantity and compute capacity. In practice, there usually exists a large number of heterogeneous GPU devices due to the rapid release cycle of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-23 WenZheng Zhang , Yang Hu , Jing Shi , Xiaoying Bai

We introduce Diffuse, a system that dynamically performs task and kernel fusion in distributed, task-based runtime systems. The key component of Diffuse is an intermediate representation of distributed computation that enables the necessary…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-17 Rohan Yadav , Shiv Sundram , Wonchan Lee , Michael Garland , Michael Bauer , Alex Aiken , Fredrik Kjolstad

A distributed spiral algorithm for distributed optimization in WSN is proposed. By forming a spiral-shape message passing scheme among clusters, without loss of estimation accuracy and convergence speed, the algorithm is proved to converge…

Networking and Internet Architecture · Computer Science 2008-09-22 Zheng Sun

We extend replica exchange simulation in two ways, and apply our approaches to biomolecules. The first generalization permits exchange simulation between models of differing resolution -- i.e., between detailed and coarse-grained models.…

Biomolecules · Quantitative Biology 2009-11-11 Edward Lyman , F. Marty Ytreberg , Daniel M. Zuckerman

In this work, we consider alternative discretizations for PDEs which use expansions involving integral operators to approximate spatial derivatives. These constructions use explicit information within the integral terms, but treat boundary…

Computational Physics · Physics 2024-11-12 Andrew J. Christlieb , Pierson T. Guthrey , William A. Sands , Mathialakan Thavappiragasm

Generalized sparse matrix-matrix multiplication (or SpGEMM) is a key primitive for many high performance graph algorithms as well as for some linear solvers, such as algebraic multigrid. Here we show that SpGEMM also yields efficient…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-19 Aydin Buluc , John Gilbert

Hella et al. (PODC 2012, Distributed Computing 2015) identified seven different models of distributed computing - one of which is the port-numbering model - and provided a complete classification of their computational power relative to…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-05-12 Tuomo Lempiäinen

The distributed matrix multiplication problem with an unknown number of stragglers is considered, where the goal is to efficiently and flexibly obtain the product of two massive matrices by distributing the computation across N servers.…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-23 Weiqi Li , Zhen Chen , Zhiying Wang , Syed A. Jafar , Hamid Jafarkhani

In a common approach for parallel processing applied to simulations of many-particle systems with short-ranged interactions and uniform density, the simulation cell is partitioned into domains of equal shape and size, each of which is…

Materials Science · Physics 2007-05-23 M. A. Stijnman , R. H. Bisseling , G. T. Barkema

Matrix multiplication is a fundamental operation in both training of neural networks and inference. To accelerate matrix multiplication, Graphical Processing Units (GPUs) provide it implemented in hardware. Due to the increased throughput…

Mathematical Software · Computer Science 2026-04-07 Faizan A. Khattak , Mantas Mikaitis

Furthering our understanding of many of today's interesting problems in plasma physics---including plasma based acceleration and magnetic reconnection with pair production due to quantum electrodynamic effects---requires large-scale kinetic…

Computational Physics · Physics 2020-10-28 Kyle G. Miller , Roman P. Lee , Adam Tableman , Anton Helm , Ricardo A. Fonseca , Viktor K. Decyk , Warren B. Mori