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The maximum common subtree isomorphism problem asks for the largest possible isomorphism between subtrees of two given input trees. This problem is a natural restriction of the maximum common subgraph problem, which is ${\sf NP}$-hard in…

Data Structures and Algorithms · Computer Science 2016-08-23 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

We propose an algorithm for solving of the graph isomorphism problem. Also, we introduce the new class of graphs for which the graph isomorphism problem can be solved polynomially using the algorithm.

Combinatorics · Mathematics 2007-05-23 Rashit T. Faizullin , Alexander V. Prolubnikov

Given an n-vertex graph G, a drawing of G in the plane is a mapping of its vertices into points of the plane, and its edges into continuous curves, connecting the images of their endpoints. A crossing in such a drawing is a point where two…

Data Structures and Algorithms · Computer Science 2010-10-20 Julia Chuzhoy , Yury Makarychev , Anastasios Sidiropoulos

The Surjective Homomorphism problem is to test whether a given graph G called the guest graph allows a vertex-surjective homomorphism to some other given graph H called the host graph. The bijective and injective homomorphism problems can…

Discrete Mathematics · Computer Science 2016-12-16 Petr A. Golovach , Bernard Lidický , Barnaby Martin , Daniël Paulusma

We consider the problem of testing graph cluster structure: given access to a graph $G=(V, E)$, can we quickly determine whether the graph can be partitioned into a few clusters with good inner conductance, or is far from any such graph?…

Data Structures and Algorithms · Computer Science 2018-09-19 Ashish Chiplunkar , Michael Kapralov , Sanjeev Khanna , Aida Mousavifar , Yuval Peres

Constructing a spanning tree of a graph is one of the most basic tasks in graph theory. We consider a relaxed version of this problem in the setting of local algorithms. The relaxation is that the constructed subgraph is a sparse spanning…

Data Structures and Algorithms · Computer Science 2021-04-28 Reut Levi , Dana Ron , Ronitt Rubinfeld

Consider two planar graphs which are subject to edge insertions and deletions. We show that whether the two graphs are isomorphic can be maintained with first-order logic formulas and auxiliary data of polynomial size. This places the…

Logic in Computer Science · Computer Science 2026-04-27 Samir Datta , Asif Khan , Felix Tschirbs , Nils Vortmeier , Thomas Zeume

What is the best way to match the nodes of two graphs? This graph alignment problem generalizes graph isomorphism and arises in applications from social network analysis to bioinformatics. Some solutions assume that auxiliary information on…

Information Retrieval · Computer Science 2021-06-14 Judith Hermanns , Anton Tsitsulin , Marina Munkhoeva , Alex Bronstein , Davide Mottin , Panagiotis Karras

Graph similarity computation aims to predict a similarity score between one pair of graphs to facilitate downstream applications, such as finding the most similar chemical compounds similar to a query compound or Fewshot 3D Action…

Machine Learning · Computer Science 2021-01-06 Haoyan Xu , Ziheng Duan , Jie Feng , Runjian Chen , Qianru Zhang , Zhongbin Xu , Yueyang Wang

The complexity of the maximum common connected subgraph problem in partial $k$-trees is still not fully understood. Polynomial-time solutions are known for degree-bounded outerplanar graphs, a subclass of the partial $2$-trees. On the other…

Data Structures and Algorithms · Computer Science 2017-08-10 Nils Kriege , Florian Kurpicz , Petra Mutzel

It is known that a graph isomorphism testing algorithm is polynomially equivalent to a detecting of a graph non-trivial automorphism algorithm. The polynomiality of the latter algorithm, is obtained by consideration of symmetry properties…

General Mathematics · Mathematics 2007-05-23 Aleksandr Golubchik

We present the first algorithm to morph graphs on the torus. Given two isotopic essentially 3-connected embeddings of the same graph on the Euclidean flat torus, where the edges in both drawings are geodesics, our algorithm computes a…

Computational Geometry · Computer Science 2020-07-17 Erin Wolf Chambers , Jeff Erickson , Patrick Lin , Salman Parsa

We study the Induced $H$ Partition problem from the parameterized complexity point of view. In the Induced $H$ Partition problem the task is to partition vertices of a graph $G$ into sets $V_1,V_2,\dots,V_n$ such that the graph $H$ is…

Discrete Mathematics · Computer Science 2016-03-11 Dušan Knop

Graph Isomorphism is such an important problem in computer science, that it has been widely studied over the last decades. It is well known that it belongs to NP class, but is not NP-complete. It is thought to be of comparable difficulty to…

Computational Complexity · Computer Science 2022-10-07 Hernán I. de la Cruz , Fernando L. Pelayo , Vicente Pascual , Jose J. Paulet , Fernando Cuartero , Luis Llana , Mauro Mezzini

A graph $G$ covers a graph $H$ if there exists a locally bijective homomorphism from $G$ to $H$. We deal with regular covers in which this locally bijective homomorphism is prescribed by an action of a subgroup of ${\rm Aut}(G)$. Regular…

Combinatorics · Mathematics 2014-05-29 Jiří Fiala , Pavel Klavík , Jan Kratochvíl , Roman Nedela

We study the recognition complexity of subgraphs of k-connected planar cubic graphs for k = 1, 2, 3. We present polynomial-time algorithms to recognize subgraphs of 1- and 2-connected planar cubic graphs, both in the variable and fixed…

Discrete Mathematics · Computer Science 2024-10-15 Miriam Goetze , Paul Jungeblut , Torsten Ueckerdt

The subgraph homeomorphism problem, SHP($H$), has been shown to be polynomial-time solvable for any fixed pattern graph $H$, but practical algorithms have been developed only for a few specific pattern graphs. Among these are the wheels…

Discrete Mathematics · Computer Science 2017-05-05 Rebecca Robinson , Graham Farr

A graph $G=(V,E)$ is a {\it unipolar graph} if there exits a partition $V=V_1 \cup V_2$ such that, $V_1$ is a clique and $V_2$ induces the disjoint union of cliques. The complement-closed class of {\it generalized split graphs} are those…

Discrete Mathematics · Computer Science 2013-09-24 Elaine M. Eschen , Xiaoqiang Wang

Finding the common structural features of two molecules is a fundamental task in cheminformatics. Most drugs are small molecules, which can naturally be interpreted as graphs. Hence, the task is formalized as maximum common subgraph…

Data Structures and Algorithms · Computer Science 2016-10-28 Andre Droschinsky , Nils Kriege , Petra Mutzel

Subgraph isomorphism counting is known as #P-complete and requires exponential time to find the accurate solution. Utilizing representation learning has been shown as a promising direction to represent substructures and approximate the…

Machine Learning · Computer Science 2024-05-14 Xin Liu , Weiqi Wang , Jiaxin Bai , Yangqiu Song