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In this study, we performed comprehensive morphological investigations of the spontaneous formations of effective network structures among elements in coupled logistic maps, specifically with a delayed connection change. Our proposed model…

Adaptation and Self-Organizing Systems · Physics 2020-12-02 Amika Ohara , Masashi Fujii , Akinori Awazu

Metabolism is a fascinating cell machinery underlying life and disease and genome-scale reconstructions provide us with a captivating view of its complexity. However, deciphering the relationship between metabolic structure and function…

Molecular Networks · Quantitative Biology 2011-09-12 M. Angeles Serrano , Marian Boguna , Francesc Sagues

Complex networks are characterized by several topological properties: degree distribution, clustering coefficient, average shortest path length, etc. Using a simple model to generate scale-free networks embedded on geographical space, we…

Disordered Systems and Neural Networks · Physics 2013-11-20 Satoru Morita

We study navigation with limited information in networks and demonstrate that many real-world networks have a structure which can be described as favoring communication at short distance at the cost of constraining communication at long…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. Rosvall , P. Minnhagen , K. Sneppen

We consider the dynamics of a reaction-diffusion system on a multigraph. The species share the same set of nodes but can access different links to explore the embedding spatial support. By acting on the topology of the networks we can…

Statistical Mechanics · Physics 2016-12-21 Malbor Asllani , Timoteo Carletti , Duccio Fanelli

One of the most important features observed in real networks is that, as a network's topology evolves so does the network's ability to perform various complex tasks. To explain this, it has also been observed that as a network grows certain…

Physics and Society · Physics 2017-12-06 L. A. Bunimovich , D. C. Smith , B. Z. Webb

Self-regulation of living tissue as an example of self-organization phenomena in hierarchical systems of biological, ecological, and social nature is under consideration. The characteristic feature of these systems is the absence of any…

Medical Physics · Physics 2009-11-30 Wassily Lubashevsky , Ihor Lubashevsky , Reinhard Mahnke

In both natural and engineered systems, communication often occurs dynamically over networks ranging from highly structured grids to largely disordered graphs. To use, or comprehend the use of, networks as efficient communication media…

Physics and Society · Physics 2020-03-17 Giacomo Baggio , Virginia Rutten , Guillaume Hennequin , Sandro Zampieri

In this paper we present a network model to study the impact of spatial distribution of constituents, coupling between them and diffusive processes in the context of biological situations. The model is in terms of network of mobile elements…

Molecular Networks · Quantitative Biology 2007-05-23 Kanchan Thadani , Ashutosh

Replacing conventional power sources by renewable sources in current power grids drastically alters their structure and functionality. The resulting grid will be far more decentralized with an distinctly different topology. Here we analyze…

Adaptation and Self-Organizing Systems · Physics 2014-08-04 Martin Rohden , Andreas Sorge , Dirk Witthaut , Marc Timme

A great variety of systems in nature, society and technology -- from the web of sexual contacts to the Internet, from the nervous system to power grids -- can be modeled as graphs of vertices coupled by edges. The network structure,…

Adaptation and Self-Organizing Systems · Physics 2012-10-10 Petter Holme , Jari Saramäki

It has been discovered recently that many social, biological and ecological systems have the so-called small-world and scale-free features, which has provoked new research interest in the studies of various complex networks. Yet, most…

Disordered Systems and Neural Networks · Physics 2007-05-23 Chunguang Li , Guanrong Chen

Many complex networks exhibit a percolation transition involving a macroscopic connected component, with universal features largely independent of the microscopic model and the macroscopic domain geometry. In contrast, we show that the…

Disordered Systems and Neural Networks · Physics 2017-06-29 Justin Coon , Carl P. Dettmann , Orestis Georgiou

Many natural, complex systems are remarkably stable thanks to an absence of feedback acting on their elements. When described as networks, these exhibit few or no cycles, and associated matrices have small leading eigenvalues. It has been…

Physics and Society · Physics 2017-06-12 Samuel Johnson , Nick S. Jones

Topological features of gene regulatory networks can be successfully reproduced by a model population evolving under selection for short dynamical attractors. The evolved population of networks exhibit motif statistics, summarized by…

Molecular Networks · Quantitative Biology 2016-08-11 Burçin Danacı , Mehmet Ali Anıl , Ayşe Erzan

Many growing networks possess accelerating statistics where the number of links added with each new node is an increasing function of network size so the total number of links increases faster than linearly with network size. In particular,…

Molecular Networks · Quantitative Biology 2017-12-22 M. J. Gagen , J. S. Mattick

Genetic regulatory networks are defined by their topology and by a multitude of continuously adjustable parameters. Here we present a class of simple models within which the relative importance of topology vs. interaction strengths becomes…

Molecular Networks · Quantitative Biology 2013-08-02 Mikhail Tikhonov , William Bialek

The extraordinary computational power of the brain may be related in part to the fact that each of the smaller neural networks that compose it can behave transiently in many different ways, depending on its inputs. Mathematically, input…

Neurons and Cognition · Quantitative Biology 2008-03-29 Léonard Gérard , Jean-Jacques Slotine

Different classes of communication network topologies and their representation in the form of adjacency matrix and its eigenvalues are presented. A self-organizing feature map neural network is used to map different classes of communication…

Neural and Evolutionary Computing · Computer Science 2007-05-23 W. Ali , R. J. Mondragon , F. Alavi

To find interesting structure in networks, community detection algorithms have to take into account not only the network topology, but also dynamics of interactions between nodes. We investigate this claim using the paradigm of…

Social and Information Networks · Computer Science 2012-03-19 Rumi Ghosh , Kristina Lerman